1rz7: Difference between revisions

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-[[Image:1rz7.png|left|200px]]
-{{STRUCTURE_1rz7|  PDB=1rz7  |  SCENE=  }}
+==CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 GP120-REACTIVE ANTIBODY 48D==
+<StructureSection load='1rz7' size='340' side='right'caption='[[1rz7]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1rz7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RZ7 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rz7 OCA], [https://pdbe.org/1rz7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rz7 RCSB], [https://www.ebi.ac.uk/pdbsum/1rz7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rz7 ProSAT]</span></td></tr>
+</table>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rz/1rz7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rz7 ConSurf].
+<div style="clear:both"></div>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+The conserved surface of the HIV-1 gp120 envelope glycoprotein that binds to the HIV-1 coreceptor is protected from humoral recognition by multiple layers of camouflage. Here we present sequence and genomic analyses for 12 antibodies that pierce these defenses and determine the crystal structures of 5. The data reveal mechanisms and atomic-level details for three unusual immune features: posttranslational mimicry of coreceptor by tyrosine sulfation of antibody, an alternative molecular mechanism controlling such sulfation, and highly selective V(H)-gene usage. When confronted by extraordinary viral defenses, the immune system unveils novel adaptive capabilities, with tyrosine sulfation enhancing the vocabulary of antigen recognition.
-===CRYSTAL STRUCTURE OF HUMAN ANTI-HIV-1 GP120-REACTIVE ANTIBODY 48D===
+Structural basis of tyrosine sulfation and VH-gene usage in antibodies that recognize the HIV type 1 coreceptor-binding site on gp120.,Huang CC, Venturi M, Majeed S, Moore MJ, Phogat S, Zhang MY, Dimitrov DS, Hendrickson WA, Robinson J, Sodroski J, Wyatt R, Choe H, Farzan M, Kwong PD Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):2706-11. Epub 2004 Feb 23. PMID:14981267<ref>PMID:14981267</ref>
-{{ABSTRACT_PUBMED_14981267}}
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
-==About this Structure==
+<div class="pdbe-citations 1rz7" style="background-color:#fffaf0;"></div>
-[[1rz7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RZ7 OCA].
 ==See Also==
-*[[Antibody|Antibody]]
+*[[Antibody 3D structures|Antibody 3D structures]]
+*[[Sandbox 20009|Sandbox 20009]]
-==Reference==
+*[[3D structures of human antibody|3D structures of human antibody]]
-<ref group="xtra">PMID:014981267</ref><references group="xtra"/>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Homo sapiens]]
-[[Category: Choe, H.]]
+[[Category: Large Structures]]
-[[Category: Dimitrov, D S.]]
+[[Category: Choe H]]
-[[Category: Farzan, M.]]
+[[Category: Dimitrov DS]]
-[[Category: Hendrickson, W A.]]
+[[Category: Farzan M]]
-[[Category: Huang, C C.]]
+[[Category: Hendrickson WA]]
-[[Category: Kwong, P D.]]
+[[Category: Huang CC]]
-[[Category: Majeed, S.]]
+[[Category: Kwong PD]]
-[[Category: Moore, M J.]]
+[[Category: Majeed S]]
-[[Category: Phogat, S.]]
+[[Category: Moore MJ]]
-[[Category: Robinson, J.]]
+[[Category: Phogat S]]
-[[Category: Sodroski, J.]]
+[[Category: Robinson J]]
-[[Category: Venturi, M.]]
+[[Category: Sodroski J]]
-[[Category: Wyatt, R.]]
+[[Category: Venturi M]]
-[[Category: Zhang, M Y.]]
+[[Category: Wyatt R]]
-[[Category: Antibody]]
+[[Category: Zhang M-Y]]
-[[Category: Cd4i]]
-[[Category: Gp120]]
-[[Category: Hiv-1]]
-[[Category: Immune system]]
-[[Category: Tyrosine sulfation]]
-[[Category: Vh-gene usage]]