3e9i: Difference between revisions

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-[[Image:3e9i.png|left|200px]]
-{{STRUCTURE_3e9i|  PDB=3e9i  |  SCENE=  }}
+==Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with L-Lysine hydroxamate-AMP==
+<StructureSection load='3e9i' size='340' side='right'caption='[[3e9i]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-===Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with L-Lysine hydroxamate-AMP===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3e9i]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E9I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E9I FirstGlance]. <br>
-{{ABSTRACT_PUBMED_19174549}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=XAH:5-O-{(R)-HYDROXY[(L-LYSYLAMINO)OXY]PHOSPHORYL}ADENOSINE'>XAH</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e9i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e9i OCA], [https://pdbe.org/3e9i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e9i RCSB], [https://www.ebi.ac.uk/pdbsum/3e9i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e9i ProSAT]</span></td></tr>
-[[3e9i]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E9I OCA].
+</table>
+== Function ==
-==See Also==
+[https://www.uniprot.org/uniprot/SYK_GEOSE SYK_GEOSE]
-*[[Aminoacyl tRNA Synthetase|Aminoacyl tRNA Synthetase]]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==Reference==
+Check<jmol>
-<ref group="xtra">PMID:019174549</ref><references group="xtra"/>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e9/3e9i_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e9i ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
 [[Category: Geobacillus stearothermophilus]]
-[[Category: Lysine--tRNA ligase]]
+[[Category: Large Structures]]
-[[Category: Inouye, K.]]
+[[Category: Inouye K]]
-[[Category: Itoh, T.]]
+[[Category: Itoh T]]
-[[Category: Mikami, B.]]
+[[Category: Mikami B]]
-[[Category: Sakurama, H.]]
+[[Category: Sakurama H]]
-[[Category: Takita, T.]]
+[[Category: Takita T]]
-[[Category: Yasukawa, K.]]
+[[Category: Yasukawa K]]
-[[Category: Aminoacyl trna synthetase]]
-[[Category: Atp-binding]]
-[[Category: Ligase]]
-[[Category: Magnesium]]
-[[Category: Metal-binding]]
-[[Category: Nucleotide-binding]]
-[[Category: Protein biosynthesis]]