3vr8: Difference between revisions

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-[[Image:3vr8.png|left|200px]]
-{{STRUCTURE_3vr8|  PDB=3vr8  |  SCENE=  }}
+==Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum==
+<StructureSection load='3vr8' size='340' side='right'caption='[[3vr8]], [[Resolution|resolution]] 2.81&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3vr8]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Ascaris_suum Ascaris suum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VR8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VR8 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.81&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPH:L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE'>EPH</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene>, <scene name='pdbligand=RQX:2-AMINO-3-METHOXY-6-METHYL-5-[(2E)-3-METHYLHEX-2-EN-1-YL]CYCLOHEXA-2,5-DIENE-1,4-DIONE'>RQX</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vr8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vr8 OCA], [https://pdbe.org/3vr8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vr8 RCSB], [https://www.ebi.ac.uk/pdbsum/3vr8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vr8 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/SDHA1_ASCSU SDHA1_ASCSU] Flavoprotein (Fp) subunit of the mitochondrial electron transport chain complex II which, together with the iron-sulfur protein (Ip) subunit forms the catalytic core of the complex (PubMed:12742584, PubMed:17933581, PubMed:2843227, PubMed:7739664, PubMed:7822332, PubMed:8435436). During the parasitic larvae and adult stages, which occur in an anaerobic environment, acts as a fumarate reductase by transferring electrons from rhodoquinol to fumarate (PubMed:12742584, PubMed:17933581, PubMed:2843227, PubMed:7739664, PubMed:7822332, PubMed:8435436).<ref>PMID:12742584</ref> <ref>PMID:17933581</ref> <ref>PMID:2843227</ref> <ref>PMID:7739664</ref> <ref>PMID:7822332</ref> <ref>PMID:8435436</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+In the anaerobic respiratory chain of the parasitic nematode Ascaris suum, complex II couples the reduction of fumarate to the oxidation of rhodoquinol, a reverse reaction catalyzed by mammalian complex II. In this study, the first structure of anaerobic complex II of mitochondria was determined. The structure, composed of four subunits and five co-factors, is similar to that of aerobic complex II, except for an extra peptide found in the smallest anchor subunit of the A. suum enzyme. We discuss herein the structure-function relationship of the enzyme and the critical role of the low redox potential of rhodoquinol in the fumarate reduction of A. suum complex II.
-===Mitochondrial rhodoquinol-fumarate reductase from the parasitic nematode Ascaris suum===
+Crystal structure of mitochondrial quinol-fumarate reductase from the parasitic nematode Ascaris suum.,Shimizu H, Osanai A, Sakamoto K, Inaoka DK, Shiba T, Harada S, Kita K J Biochem. 2012 Jun;151(6):589-92. Epub 2012 May 9. PMID:22577165<ref>PMID:22577165</ref>
-{{ABSTRACT_PUBMED_22577165}}
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 3vr8" style="background-color:#fffaf0;"></div>
-==About this Structure==
+==See Also==
-[[3vr8]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Ascaris_suum Ascaris suum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VR8 OCA].
+*[[Succinate dehydrogenase 3D structures|Succinate dehydrogenase 3D structures]]
+== References ==
-==Reference==
+<references/>
-<ref group="xtra">PMID:022577165</ref><references group="xtra"/>
+__TOC__
-[[Category: Ascaris suum]]
+</StructureSection>
-[[Category: Harada, S.]]
-[[Category: Inaoka, D K.]]
-[[Category: Kita, K.]]
-[[Category: Osanai, A.]]
-[[Category: Sakamoto, K.]]
-[[Category: Shiba, T.]]
-[[Category: Shimizu, H.]]
 [[Category: Ascaris suum]]
-[[Category: Membrane protein]]
+[[Category: Large Structures]]
-[[Category: Mitochondria membrane]]
+[[Category: Harada S]]
-[[Category: Oxidoreductase]]
+[[Category: Inaoka DK]]
-[[Category: Reductase]]
+[[Category: Kita K]]
+[[Category: Osanai A]]
+[[Category: Sakamoto K]]
+[[Category: Shiba T]]
+[[Category: Shimizu H]]