1svd: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| (8 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==The structure of Halothiobacillus neapolitanus RuBisCo== | |||
<StructureSection load='1svd' size='340' side='right'caption='[[1svd]], [[Resolution|resolution]] 1.80Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[1svd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Halothiobacillus_neapolitanus Halothiobacillus neapolitanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SVD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SVD FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | |||
== | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
[[1svd]] is a 2 chain structure | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1svd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1svd OCA], [https://pdbe.org/1svd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1svd RCSB], [https://www.ebi.ac.uk/pdbsum/1svd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1svd ProSAT]</span></td></tr> | ||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/RBL1_HALNC RBL1_HALNC] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338] | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sv/1svd_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1svd ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | ==See Also== | ||
*[[RuBisCO|RuBisCO]] | *[[RuBisCO 3D structures|RuBisCO 3D structures]] | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Halothiobacillus neapolitanus]] | [[Category: Halothiobacillus neapolitanus]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: Cannon | [[Category: Cannon G]] | ||
[[Category: Kerfeld | [[Category: Kerfeld CA]] | ||
[[Category: Pashkov | [[Category: Pashkov I]] | ||
[[Category: Sawaya | [[Category: Sawaya MR]] | ||
[[Category: Tran | [[Category: Tran K]] | ||
[[Category: Williams | [[Category: Williams E]] | ||
[[Category: Yeates | [[Category: Yeates TO]] | ||
Latest revision as of 09:20, 23 August 2023
The structure of Halothiobacillus neapolitanus RuBisCoThe structure of Halothiobacillus neapolitanus RuBisCo
Structural highlights
FunctionRBL1_HALNC RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.[HAMAP-Rule:MF_01338] Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. See Also |
| ||||||||||||||||||