1brf: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1brf.gif|left|200px]]<br /><applet load="1brf" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="1brf, resolution 0.95&Aring;" />
-'''RUBREDOXIN (WILD TYPE) FROM PYROCOCCUS FURIOSUS'''<br />
-==About this Structure==
+==Rubredoxin (Wild Type) from Pyrococcus Furiosus==
-BRF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus] with <scene name='pdbligand=FE:'>FE</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BRF OCA].
+<StructureSection load='1brf' size='340' side='right'caption='[[1brf]], [[Resolution|resolution]] 0.95&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1brf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BRF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BRF FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.95&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1brf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1brf OCA], [https://pdbe.org/1brf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1brf RCSB], [https://www.ebi.ac.uk/pdbsum/1brf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1brf ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RUBR_PYRFU RUBR_PYRFU] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/1brf_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1brf ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Rubredoxin 3D structures|Rubredoxin 3D structures]]
+*[[Rubredoxin PDB structures|Rubredoxin PDB structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Pyrococcus furiosus]]
-[[Category: Single protein]]
+[[Category: Adams MWW]]
-[[Category: Adams, M W.W.]]
+[[Category: Bau R]]
-[[Category: Bau, R.]]
+[[Category: Eidsness MK]]
-[[Category: Eidsness, M K.]]
+[[Category: Huang H]]
-[[Category: Huang, H.]]
+[[Category: Kurtz DM]]
-[[Category: Kurtz, D M.]]
+[[Category: Rees DC]]
-[[Category: Rees, D C.]]
+[[Category: Scott RA]]
-[[Category: Scott, R A.]]
-[[Category: FE]]
-[[Category: high-resolution structure]]
-[[Category: iron-sulfur protein]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 11:58:16 2008''