1vdk: Difference between revisions

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-[[Image:1vdk.png|left|200px]]
-{{STRUCTURE_1vdk|  PDB=1vdk  |  SCENE=  }}
+==Crystal structure of fumarase from thermus thermophilus HB8==
+<StructureSection load='1vdk' size='340' side='right'caption='[[1vdk]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-===Crystal structure of fumarase from thermus thermophilus HB8===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[1vdk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VDK FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vdk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vdk OCA], [https://pdbe.org/1vdk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vdk RCSB], [https://www.ebi.ac.uk/pdbsum/1vdk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vdk ProSAT], [https://www.topsan.org/Proteins/RSGI/1vdk TOPSAN]</span></td></tr>
-[[1vdk]] is a 2 chain structure of [[Fumarase]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VDK OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/P84127_THETH P84127_THETH]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vdk_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vdk ConSurf].
+<div style="clear:both"></div>
 ==See Also==
 *[[Fumarase|Fumarase]]
-[[Category: Fumarate hydratase]]
+__TOC__
-[[Category: Thermus thermophilus]]
+</StructureSection>
-[[Category: Kunishima, N.]]
+[[Category: Large Structures]]
-[[Category: Mizutani, H.]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Kunishima N]]
-[[Category: Fumarase]]
+[[Category: Mizutani H]]
-[[Category: Lyase]]
-[[Category: Riken structural genomics/proteomics initiative]]
-[[Category: Rsgi]]
-[[Category: Structural genomic]]
-[[Category: Tca cycle]]