3gue: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3gue.png|left|200px]]
-<!--
+==Crystal Structure of UDP-glucose phosphorylase from Trypanosoma Brucei, (Tb10.389.0330)==
-The line below this paragraph, containing "STRUCTURE_3gue", creates the "Structure Box" on the page.
+<StructureSection load='3gue' size='340' side='right'caption='[[3gue]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3gue]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GUE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GUE FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DTU:(2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL'>DTU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=UPG:URIDINE-5-DIPHOSPHATE-GLUCOSE'>UPG</scene></td></tr>
-{{STRUCTURE_3gue|  PDB=3gue  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gue OCA], [https://pdbe.org/3gue PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gue RCSB], [https://www.ebi.ac.uk/pdbsum/3gue PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gue ProSAT]</span></td></tr>
+</table>
-===Crystal Structure of UDP-glucose phosphorylase from Trypanosoma Brucei, (Tb10.389.0330)===
+== Function ==
+[https://www.uniprot.org/uniprot/Q388T4_TRYB2 Q388T4_TRYB2]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-[[3gue]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GUE OCA].
+Check<jmol>
-[[Category: Trypanosoma brucei]]
+  <jmolCheckbox>
-[[Category: UTP--glucose-1-phosphate uridylyltransferase]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gu/3gue_consurf.spt"</scriptWhenChecked>
-[[Category: Amani, M.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Arrowsmith, C H.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Bochkarev, A.]]
+  </jmolCheckbox>
-[[Category: Bountra, C.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gue ConSurf].
-[[Category: Cossar, D.]]
+<div style="clear:both"></div>
-[[Category: Edwards, A M.]]
+__TOC__
-[[Category: Ferguson, M A.J.]]
+</StructureSection>
-[[Category: Hui, R.]]
+[[Category: Large Structures]]
-[[Category: Kozieradzki, I.]]
-[[Category: Lin, Y H.]]
-[[Category: Mackenzie, F.]]
-[[Category: Marino, K.]]
-[[Category: SGC, Structural Genomics Consortium.]]
-[[Category: Schapira, M.]]
-[[Category: Weigelt, J.]]
-[[Category: Wernimont, A K.]]
-[[Category: Zhao, Y.]]
-[[Category: Glucose]]
-[[Category: Nucleotidyltransferase]]
-[[Category: Phosphatase]]
-[[Category: Sgc]]
-[[Category: Structural genomic]]
-[[Category: Structural genomics consortium]]
-[[Category: Transferase]]
 [[Category: Trypanosoma brucei]]
-[[Category: Udp]]
+[[Category: Amani M]]
+[[Category: Arrowsmith CH]]
+[[Category: Bochkarev A]]
+[[Category: Bountra C]]
+[[Category: Cossar D]]
+[[Category: Edwards AM]]
+[[Category: Ferguson MAJ]]
+[[Category: Hui R]]
+[[Category: Kozieradzki I]]
+[[Category: Lin YH]]
+[[Category: Mackenzie F]]
+[[Category: Marino K]]
+[[Category: Schapira M]]
+[[Category: Weigelt J]]
+[[Category: Wernimont AK]]
+[[Category: Zhao Y]]