1yf9: Difference between revisions

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-[[Image:1yf9.png|left|200px]]
-<!--
+==Structural analysis of Leishmania major ubiquitin conjugating enzyme E2==
-The line below this paragraph, containing "STRUCTURE_1yf9", creates the "Structure Box" on the page.
+<StructureSection load='1yf9' size='340' side='right'caption='[[1yf9]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1yf9]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Leishmania_major Leishmania major]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YF9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YF9 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-{{STRUCTURE_1yf9|  PDB=1yf9  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yf9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yf9 OCA], [https://pdbe.org/1yf9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yf9 RCSB], [https://www.ebi.ac.uk/pdbsum/1yf9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yf9 ProSAT]</span></td></tr>
+</table>
-===Structural analysis of Leishmania major ubiquitin conjugating enzyme E2===
+== Function ==
+[https://www.uniprot.org/uniprot/Q4Q5L3_LEIMA Q4Q5L3_LEIMA]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-[[1yf9]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Leishmania_major Leishmania major]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YF9 OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yf/1yf9_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yf9 ConSurf].
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Leishmania major]]
-[[Category: SGPP, Structural Genomics of Pathogenic Protozoa Consortium.]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Sgpp]]
-[[Category: Structural genomic]]
-[[Category: Structural genomics of pathogenic protozoa consortium]]
-[[Category: Ubiquitin conjugating enzyme]]
-[[Category: Unknown function]]