3vkj: Difference between revisions

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-[[Image:3vkj.jpg|left|200px]]
-<!--
+==Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase, octameric form==
-The line below this paragraph, containing "STRUCTURE_3vkj", creates the "Structure Box" on the page.
+<StructureSection load='3vkj' size='340' side='right'caption='[[3vkj]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3vkj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_shibatae Saccharolobus shibatae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VKJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VKJ FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FNR:1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL'>FNR</scene></td></tr>
-{{STRUCTURE_3vkj|  PDB=3vkj  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vkj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vkj OCA], [https://pdbe.org/3vkj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vkj RCSB], [https://www.ebi.ac.uk/pdbsum/3vkj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vkj ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/IDI2_SACSH IDI2_SACSH] Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).[HAMAP-Rule:MF_00354]<ref>PMID:19158086</ref> <ref>PMID:22158896</ref> <ref>PMID:22505674</ref>
-===Crystal structure of Sulfolobus shibatae isopentenyl diphosphate isomerase, octameric form===
+==See Also==
+*[[Isopentenyl-diphosphate delta-isomerase|Isopentenyl-diphosphate delta-isomerase]]
+== References ==
-==About this Structure==
+<references/>
-[[3vkj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_shibatae Sulfolobus shibatae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VKJ OCA].
+__TOC__
-[[Category: Isopentenyl-diphosphate Delta-isomerase]]
+</StructureSection>
-[[Category: Sulfolobus shibatae]]
+[[Category: Large Structures]]
-[[Category: Goda, S.]]
+[[Category: Saccharolobus shibatae]]
-[[Category: Hemmi, H.]]
+[[Category: Goda S]]
-[[Category: Nagai, T.]]
+[[Category: Hemmi H]]
-[[Category: Nakatani, H.]]
+[[Category: Nagai T]]
-[[Category: Unno, H.]]
+[[Category: Nakatani H]]
-[[Category: Yoshimura, T.]]
+[[Category: Unno H]]
-[[Category: Isomerase]]
+[[Category: Yoshimura T]]
-[[Category: Type 2 isopentenyl diphosphate isomerase]]