3v6h: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3v6h.jpg|left|200px]]
-<!--
+==Replication of N2,3-Ethenoguanine by DNA Polymerases==
-The line below this paragraph, containing "STRUCTURE_3v6h", creates the "Structure Box" on the page.
+<StructureSection load='3v6h' size='340' side='right'caption='[[3v6h]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3v6h]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus_P2 Saccharolobus solfataricus P2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V6H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3V6H FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DCP:2-DEOXYCYTIDINE-5-TRIPHOSPHATE'>DCP</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=EFG:1-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1H-IMIDAZO[2,1-B]PURIN-4(5H)-ONE'>EFG</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-{{STRUCTURE_3v6h|  PDB=3v6h  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3v6h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3v6h OCA], [https://pdbe.org/3v6h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3v6h RCSB], [https://www.ebi.ac.uk/pdbsum/3v6h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3v6h ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPO4_SACS2 DPO4_SACS2] Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. It is involved in translesional synthesis.
-===Replication of N2,3-Ethenoguanine by DNA Polymerases===
+==See Also==
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
+__TOC__
-<!--
+</StructureSection>
-The line below this paragraph, {{ABSTRACT_PUBMED_22488769}}, adds the Publication Abstract to the page
+[[Category: Large Structures]]
-(as it appears on PubMed at http://www.pubmed.gov), where 22488769 is the PubMed ID number.
+[[Category: Saccharolobus solfataricus P2]]
--->
+[[Category: Zhao L]]
-{{ABSTRACT_PUBMED_22488769}}
-==About this Structure==
-[[3v6h]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus_p2 Sulfolobus solfataricus p2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3V6H OCA].
-==Reference==
-<ref group="xtra">PMID:022488769</ref><references group="xtra"/>
-[[Category: DNA-directed DNA polymerase]]
-[[Category: Sulfolobus solfataricus p2]]
-[[Category: Zhao, L.]]
-[[Category: 2'-fluoro arabinose]]
-[[Category: 3-ethenoguanine]]
-[[Category: Dna adduct]]
-[[Category: Dna lesion]]
-[[Category: Dna polymerase]]
-[[Category: Dna replication]]
-[[Category: Dpo4]]
-[[Category: Ethenoguanine]]
-[[Category: Lesion bypass]]
-[[Category: N2]]
-[[Category: Sulfolobus solfataricus dna polymerase iv]]
-[[Category: Transferase-dna complex]]