3c3k: Difference between revisions

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-[[Image:3c3k.jpg|left|200px]]<br /><applet load="3c3k" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="3c3k, resolution 1.990&Aring;" />
-'''Crystal structure of an uncharacterized protein from Actinobacillus succinogenes'''<br />
-==About this Structure==
+==Crystal structure of an uncharacterized protein from Actinobacillus succinogenes==
-C3K is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Actinobacillus_succinogenes_130z Actinobacillus succinogenes 130z] with <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Alanine_racemase Alanine racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.1 5.1.1.1] Known structural/functional Sites: <scene name='pdbsite=AC1:Cl+Binding+Site+For+Residue+B+301'>AC1</scene>, <scene name='pdbsite=AC2:Gol+Binding+Site+For+Residue+A+302'>AC2</scene> and <scene name='pdbsite=AC3:Gol+Binding+Site+For+Residue+B+303'>AC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C3K OCA].
+<StructureSection load='3c3k' size='340' side='right'caption='[[3c3k]], [[Resolution|resolution]] 1.99&Aring;' scene=''>
-[[Category: Actinobacillus succinogenes 130z]]
+== Structural highlights ==
-[[Category: Alanine racemase]]
+<table><tr><td colspan='2'>[[3c3k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinobacillus_succinogenes_130Z Actinobacillus succinogenes 130Z]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C3K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C3K FirstGlance]. <br>
-[[Category: Single protein]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99&#8491;</td></tr>
-[[Category: Almo, S.C.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-[[Category: Burley, S.K.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c3k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c3k OCA], [https://pdbe.org/3c3k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c3k RCSB], [https://www.ebi.ac.uk/pdbsum/3c3k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c3k ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3c3k TOPSAN]</span></td></tr>
-[[Category: Malashkevich, V.N.]]
+</table>
-[[Category: Meyer, A.J.]]
+== Function ==
-[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+[https://www.uniprot.org/uniprot/A6VL88_ACTSZ A6VL88_ACTSZ]
-[[Category: Sauder, J.M.]]
+== Evolutionary Conservation ==
-[[Category: Toro, R.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: CL]]
+Check<jmol>
-[[Category: GOL]]
+  <jmolCheckbox>
-[[Category: crystal structure]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c3/3c3k_consurf.spt"</scriptWhenChecked>
-[[Category: dna-binding]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: isomerase]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: new york structural genomix research consortium]]
+  </jmolCheckbox>
-[[Category: nysgxrc]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c3k ConSurf].
-[[Category: protein structure initiative]]
+<div style="clear:both"></div>
-[[Category: psi-2]]
-[[Category: structural genomics]]
-[[Category: transcription]]
-[[Category: transcription regulation]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb  6 17:27:25 2008''
+==See Also==
+*[[Alanine racemase 3D structures|Alanine racemase 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Actinobacillus succinogenes 130Z]]
+[[Category: Large Structures]]
+[[Category: Almo SC]]
+[[Category: Burley SK]]
+[[Category: Malashkevich VN]]
+[[Category: Meyer AJ]]
+[[Category: Sauder JM]]
+[[Category: Toro R]]