3svi: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3svi.png|left|200px]]
-<!--
+==Structure of the Pto-binding domain of HopPmaL generated by limited thermolysin digestion==
-The line below this paragraph, containing "STRUCTURE_3svi", creates the "Structure Box" on the page.
+<StructureSection load='3svi' size='340' side='right'caption='[[3svi]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3svi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._maculicola_str._ES4326 Pseudomonas syringae pv. maculicola str. ES4326]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3SVI FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_3svi|  PDB=3svi  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3svi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3svi OCA], [https://pdbe.org/3svi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3svi RCSB], [https://www.ebi.ac.uk/pdbsum/3svi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3svi ProSAT]</span></td></tr>
+</table>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+HopPmaL is a member of the HopAB family of type III effectors present in the phytopathogen Pseudomonas syringae. Using both X-ray crystallography and solution nuclear magnetic resonance, we demonstrate that HopPmaL contains two structurally homologous yet functionally distinct domains. The N-terminal domain corresponds to the previously described Pto-binding domain, while the previously uncharacterised C-terminal domain spans residues 308-385. While structurally similar, these domains do not share significant sequence similarity and most importantly demonstrate significant differences in key residues involved in host protein recognition, suggesting that each of them targets a different host protein.
-===Structure of the Pto-binding domain of HopPmaL generated by limited thermolysin digestion===
+Structural Analysis of HopPmaL Reveals the Presence of a Second Adaptor Domain Common to the HopAB Family of Pseudomonas syringae Type III Effectors.,Singer AU, Wu B, Yee A, Houliston S, Xu X, Cui H, Skarina T, Garcia M, Semesi A, Arrowsmith CH, Savchenko A Biochemistry. 2012 Jan 10;51(1):1-3. Epub 2011 Dec 28. PMID:22191472<ref>PMID:22191472</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_22191472}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 3svi" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 22191472 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_22191472}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Large Structures]]
-[[3svi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae Pseudomonas syringae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3SVI OCA].
+[[Category: Pseudomonas syringae pv. maculicola str. ES4326]]
+[[Category: Cui H]]
-==Reference==
+[[Category: Edwards AM]]
-<ref group="xtra">PMID:022191472</ref><references group="xtra"/>
+[[Category: Joachimiak A]]
-[[Category: Pseudomonas syringae]]
+[[Category: Savchenko A]]
-[[Category: Cui, H.]]
+[[Category: Singer AU]]
-[[Category: Edwards, A M.]]
+[[Category: Stein A]]
-[[Category: Joachimiak, A.]]
+[[Category: Xu X]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
-[[Category: Savchenko, A.]]
-[[Category: Singer, A U.]]
-[[Category: Stein, A.]]
-[[Category: Xu, X.]]
-[[Category: Helical bundle]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Psi-biology]]
-[[Category: Signaling protein]]
-[[Category: Structural genomic]]
-[[Category: Type iii effector]]