3u02: Difference between revisions

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[[Image:3u02.jpg|left|200px]]


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==Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225==
The line below this paragraph, containing "STRUCTURE_3u02", creates the "Structure Box" on the page.
<StructureSection load='3u02' size='340' side='right'caption='[[3u02]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3u02]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U02 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3U02 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.399&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TPO:PHOSPHOTHREONINE'>TPO</scene></td></tr>
{{STRUCTURE_3u02|  PDB=3u02  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3u02 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3u02 OCA], [https://pdbe.org/3u02 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3u02 RCSB], [https://www.ebi.ac.uk/pdbsum/3u02 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3u02 ProSAT]</span></td></tr>
 
</table>
===Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225===
== Function ==
 
[https://www.uniprot.org/uniprot/Q8TZX0_PYRFU Q8TZX0_PYRFU] ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA (By similarity).[HAMAP-Rule:MF_01892]
 
__TOC__
==About this Structure==
</StructureSection>
[[3u02]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3U02 OCA].  
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus dsm 3638]]
[[Category: Pyrococcus furiosus DSM 3638]]
[[Category: Acton, T B.]]
[[Category: Acton TB]]
[[Category: Ciccosanti, C.]]
[[Category: Ciccosanti C]]
[[Category: Everett, J K.]]
[[Category: Everett JK]]
[[Category: Hunt, J F.]]
[[Category: Hunt JF]]
[[Category: Kuzin, A.]]
[[Category: Kuzin A]]
[[Category: Lew, S.]]
[[Category: Lew S]]
[[Category: Montelione, G T.]]
[[Category: Montelione GT]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Nair R]]
[[Category: Nair, R.]]
[[Category: Rost B]]
[[Category: Rost, B.]]
[[Category: Sahdev S]]
[[Category: Sahdev, S.]]
[[Category: Seetharaman J]]
[[Category: Seetharaman, J.]]
[[Category: Tong L]]
[[Category: Tong, L.]]
[[Category: Wang H]]
[[Category: Wang, H.]]
[[Category: Xiao R]]
[[Category: Xiao, R.]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: Protein structure initiative]]
[[Category: Psi-biology]]
[[Category: Structural genomic]]
[[Category: Transcription]]

Latest revision as of 12:44, 30 October 2024

Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225

Structural highlights

3u02 is a 4 chain structure with sequence from Pyrococcus furiosus DSM 3638. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.399Å
Ligands:, , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q8TZX0_PYRFU ATP-dependent agmatine transferase that catalyzes the formation of 2-agmatinylcytidine (agm2C) at the wobble position (C34) of tRNA(Ile2), converting the codon specificity from AUG to AUA (By similarity).[HAMAP-Rule:MF_01892]

3u02, resolution 2.40Å

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