2oai: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2oai.jpg|left|200px]]<br /><applet load="2oai" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2oai, resolution 1.80&Aring;" />
-'''The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin.'''<br />
-==About this Structure==
+==The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin.==
-OAI is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Xylella_fastidiosa Xylella fastidiosa] with <scene name='pdbligand=CA:'>CA</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OAI OCA].
+<StructureSection load='2oai' size='340' side='right'caption='[[2oai]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
-[[Category: Xylella fastidiosa]]
+<table><tr><td colspan='2'>[[2oai]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xylella_fastidiosa_Temecula1 Xylella fastidiosa Temecula1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OAI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OAI FirstGlance]. <br>
-[[Category: Abdullah, J.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-[[Category: Binkowski, T.A.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Cuff, M.E.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oai FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oai OCA], [https://pdbe.org/2oai PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oai RCSB], [https://www.ebi.ac.uk/pdbsum/2oai PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oai ProSAT], [https://www.topsan.org/Proteins/MCSG/2oai TOPSAN]</span></td></tr>
-[[Category: Joachimiak, A.]]
+</table>
-[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+== Function ==
-[[Category: Volkart, L.]]
+[https://www.uniprot.org/uniprot/Q87DZ3_XYLFT Q87DZ3_XYLFT]
-[[Category: CA]]
+== Evolutionary Conservation ==
-[[Category: EDO]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: hemolysin]]
+Check<jmol>
-[[Category: mcsg]]
+  <jmolCheckbox>
-[[Category: midwest center for structural genomics]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oa/2oai_consurf.spt"</scriptWhenChecked>
-[[Category: pfam03471]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: protein structure initiative]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: psi-2]]
+  </jmolCheckbox>
-[[Category: structural genomics]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oai ConSurf].
-[[Category: xylella fastidiosa temecula1]]
+<div style="clear:both"></div>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 21:07:57 2008''
+==See Also==
+*[[Hemolysin 3D structures|Hemolysin 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Xylella fastidiosa Temecula1]]
+[[Category: Abdullah J]]
+[[Category: Binkowski TA]]
+[[Category: Cuff ME]]
+[[Category: Joachimiak A]]
+[[Category: Volkart L]]