2i52: Difference between revisions

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New page: left|200px<br /><applet load="2i52" size="350" color="white" frame="true" align="right" spinBox="true" caption="2i52, resolution 2.080Å" /> '''Crystal structure o...
 
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[[Image:2i52.gif|left|200px]]<br /><applet load="2i52" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2i52, resolution 2.080&Aring;" />
'''Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372'''<br />


==About this Structure==
==Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372==
2I52 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Picrophilus_torridus Picrophilus torridus] with <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I52 OCA].
<StructureSection load='2i52' size='340' side='right'caption='[[2i52]], [[Resolution|resolution]] 2.08&Aring;' scene=''>
[[Category: Picrophilus torridus]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2i52]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Picrophilus_torridus_DSM_9790 Picrophilus torridus DSM 9790]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I52 FirstGlance]. <br>
[[Category: Almo, S.C.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.08&#8491;</td></tr>
[[Category: Bain, K.T.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
[[Category: Burley, S.K.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i52 OCA], [https://pdbe.org/2i52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i52 RCSB], [https://www.ebi.ac.uk/pdbsum/2i52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i52 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2i52 TOPSAN]</span></td></tr>
[[Category: Gilmore, J.]]
</table>
[[Category: McKenzie, C.]]
== Function ==
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
[https://www.uniprot.org/uniprot/MPTD_PICTO MPTD_PICTO] Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).[HAMAP-Rule:MF_02130]
[[Category: Ramagopal, U.A.]]
== Evolutionary Conservation ==
[[Category: Reyes, C.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Sauder, J.M.]]
Check<jmol>
[[Category: Toro, R.]]
  <jmolCheckbox>
[[Category: CA]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/2i52_consurf.spt"</scriptWhenChecked>
[[Category: CL]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: GOL]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: new york structural genomix research consortium]]
  </jmolCheckbox>
[[Category: nysgxrc]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i52 ConSurf].
[[Category: protein structure initiative]]
<div style="clear:both"></div>
[[Category: psi]]
__TOC__
[[Category: structural genomics]]
</StructureSection>
[[Category: unknown function]]
[[Category: Large Structures]]
 
[[Category: Picrophilus torridus DSM 9790]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 20:34:56 2008''
[[Category: Almo SC]]
[[Category: Bain KT]]
[[Category: Burley SK]]
[[Category: Gilmore J]]
[[Category: McKenzie C]]
[[Category: Ramagopal UA]]
[[Category: Reyes C]]
[[Category: Sauder JM]]
[[Category: Toro R]]

Latest revision as of 12:01, 21 February 2024

Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372

Structural highlights

2i52 is a 6 chain structure with sequence from Picrophilus torridus DSM 9790. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.08Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

MPTD_PICTO Catalyzes the conversion of 7,8-dihydroneopterin (H2Neo) to 6-hydroxymethyl-7,8-dihydropterin (6-HMD).[HAMAP-Rule:MF_02130]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2i52, resolution 2.08Å

Drag the structure with the mouse to rotate

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