2d5a: Difference between revisions

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New page: left|200px<br /><applet load="2d5a" size="350" color="white" frame="true" align="right" spinBox="true" caption="2d5a, resolution 1.70Å" /> '''hypothetical protein...
 
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[[Image:2d5a.jpg|left|200px]]<br /><applet load="2d5a" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2d5a, resolution 1.70&Aring;" />
'''hypothetical protein from Pyrococcus horikoshii OT3'''<br />


==About this Structure==
==hypothetical protein from Pyrococcus horikoshii OT3==
2D5A is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii] with <scene name='pdbligand=COA:'>COA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5A OCA].
<StructureSection load='2d5a' size='340' side='right'caption='[[2d5a]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
[[Category: Pyrococcus horikoshii]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2d5a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii_OT3 Pyrococcus horikoshii OT3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5A FirstGlance]. <br>
[[Category: Hiyama, B.T.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene></td></tr>
[[Category: Sekine, S.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5a OCA], [https://pdbe.org/2d5a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5a RCSB], [https://www.ebi.ac.uk/pdbsum/2d5a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5a ProSAT], [https://www.topsan.org/Proteins/RSGI/2d5a TOPSAN]</span></td></tr>
[[Category: Yokoyama, S.]]
</table>
[[Category: COA]]
== Function ==
[[Category: coa binding]]
[https://www.uniprot.org/uniprot/O58836_PYRHO O58836_PYRHO]  
[[Category: hypothetical protein]]
== Evolutionary Conservation ==
[[Category: national project on protein structural and functional analyses]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: nppsfa]]
Check<jmol>
[[Category: riken structural genomics/proteomics initiative]]
  <jmolCheckbox>
[[Category: rsgi]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5a_consurf.spt"</scriptWhenChecked>
[[Category: structural genomics]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jan 29 18:55:42 2008''
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5a ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii OT3]]
[[Category: Hiyama TB]]
[[Category: Sekine S]]
[[Category: Yokoyama S]]

Latest revision as of 16:46, 13 March 2024

hypothetical protein from Pyrococcus horikoshii OT3hypothetical protein from Pyrococcus horikoshii OT3

Structural highlights

2d5a is a 1 chain structure with sequence from Pyrococcus horikoshii OT3. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.7Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

O58836_PYRHO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2d5a, resolution 1.70Å

Drag the structure with the mouse to rotate

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OCA
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