Alpha-1-antitrypsin: Difference between revisions

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{{STRUCTURE_1atu |  PDB=1atu1ezxwd.pdb  |  SCENE=User:Daniel_Seeman/Alpha-1-antitrypsin/437437437437/1}}
<StructureSection load='' size='350' side='right' scene='User:Daniel_Seeman/Alpha-1-antitrypsin/437437437437/1' caption='Transition of α1-antitrypsin between active and inactive conformations '>
'''Alpha-1-antitrypsin''' (also known as α1-antitrypsin or A1AT) is an inhibitor of [[Elastase]] and [[Trypsin]].  It is a member of the '''Ser'''ine '''P'''rotease '''I'''nhibitor ([[:Category:Serpin|Serpin]]) family, and as such undergoes a conformational change where the substrate protein associates with a loop region on A1AT causing that loop to become ordered as a Beta Strand<ref name="nature_paper">''Nature'' '''455''', 1189-1190 (30 October 2008)</ref>.  In this case Trypsin (the substrate) is inhibited when a covalent bond is formed to A1AT through the newly formed Beta region<ref name="nature_paper" />.  Once bound covalently to its substrate the stability of the A1AT complex goes up drastically, making it an effective "molecular mousetrap"<ref name="nature_paper" />.  With A1AT, as with most members of the Serpin family, the transition from inactive precursor protein to active complex comes after a cleavage event<ref name="nature_paper" />.  Shown <scene name='User:Daniel_Seeman/Alpha-1-antitrypsin/437437437437/1'>on the right</scene> is a morph, generated by the <span class="plainlinks">[http://molmovdb.mbb.yale.edu/molmovdb/morph/ Yale Morph Server]</span> that shows A1AT going from its inactive form, to the conformation in which it is bound to Trypsin (also shown in the same animation)<ref>The <span class="plainlinks">[http://molmovdb.mbb.yale.edu/molmovdb/morph/ Yale Morph Server]</span></ref>.  
__TOC__
=== Function ===
'''Alpha-1-antitrypsin''' (also known as α1-antitrypsin or A1AT) is an inhibitor of [[Elastase]] and [[Trypsin]].  It is a member of the '''Ser'''ine '''P'''rotease '''I'''nhibitor ([[:Category:Serpin|Serpin]]) family, and as such undergoes a conformational change where the substrate protein associates with a loop region on A1AT causing that loop to become ordered as a Beta Strand<ref name="nature_paper">''Nature'' '''455''', 1189-1190 (30 October 2008)</ref>.  In this case Trypsin (the substrate) is inhibited when a covalent bond is formed to A1AT through the newly formed Beta region<ref name="nature_paper" />.  Once bound covalently to its substrate the stability of the A1AT complex goes up drastically, making it an effective "molecular mousetrap"<ref name="nature_paper" />.  With A1AT, as with most members of the Serpin family, the transition from inactive precursor protein to active complex comes after a cleavage event<ref name="nature_paper" />.   
Shown <scene name='User:Daniel_Seeman/Alpha-1-antitrypsin/437437437437/1'>on the right</scene> is a morph, generated by the <span class="plainlinks">[http://molmovdb.mbb.yale.edu/molmovdb/morph/ Yale Morph Server]</span> that shows A1AT going from its inactive form, to the conformation in which it is bound to Trypsin (also shown in the same animation)<ref>The <span class="plainlinks">[http://molmovdb.mbb.yale.edu/molmovdb/morph/ Yale Morph Server]</span></ref>.  


=== Role in disease ===
=== Role in disease ===
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==3D structures of Alpha-1-antitrypsin==
==3D structures of Alpha-1-antitrypsin==
[[Alpha-1-antitrypsin 3D structures]]


===Uncleaved A1AT===
</StructureSection>
 
__NOTOC__
[[1qlp]], [[2qug]], [[3cwl]] - hA1AT – human)<br />
[[1atu]], [[1psi]], [[1hp7]], [[3dru]], [[3drm]] – hA1AT (mutant)<br />
[[1ezx]] - hA1AT fragment + trypsin<br />
[[1oph]] - hA1AT (mutant) + trypsinogen (mutant)<br />
[[1oo8]] - hA1AT precursor (mutant)<br />
[[2d26]] - hA1AT + elastase-1<br />
[[3cwm]] - hA1AT + citrate
 
===Cleaved A1AT===
 
[[3ndd]], [[3ndf]], [[1qmb]] – hA1AT (mutant)<br />




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<references />  
<references />  


[[Category:Topic Page]]
[[Category:Alpha-1-antitrypsin]]
[[Category:Alpha-1-antitrypsin]]
[[Category:Elastase inhibitor]]
[[Category:Elastase inhibitor]]

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

Daniel Seeman, Michal Harel, Alexander Berchansky, Joel L. Sussman