2pdo: Difference between revisions

From Proteopedia
Jump to navigation Jump to search
No edit summary
No edit summary
 
(14 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2pdo.gif|left|200px]]<br /><applet load="2pdo" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2pdo, resolution 2.00&Aring;" />
'''Crystal Structure of the Putative Acetyltransferase of GNAT Family from Shigella flexneri'''<br />


==About this Structure==
==Crystal Structure of the Putative Acetyltransferase of GNAT Family from Shigella flexneri==
2PDO is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Shigella_flexneri_2a Shigella flexneri 2a] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=EDO:'>EDO</scene> and <scene name='pdbligand=ACY:'>ACY</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDO OCA].  
<StructureSection load='2pdo' size='340' side='right'caption='[[2pdo]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
[[Category: Shigella flexneri 2a]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2pdo]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Shigella_flexneri_2a_str._2457t Shigella flexneri 2a str. 2457t]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PDO FirstGlance]. <br>
[[Category: Holzle, D.]]
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Joachimiak, A.]]
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Kim, Y.]]
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ypeA, SF2487, S_2635 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=198215 Shigella flexneri 2a str. 2457T])</td></tr>
[[Category: Li, H.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pdo OCA], [https://pdbe.org/2pdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pdo RCSB], [https://www.ebi.ac.uk/pdbsum/2pdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pdo ProSAT], [https://www.topsan.org/Proteins/MCSG/2pdo TOPSAN]</span></td></tr>
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
</table>
[[Category: ACY]]
== Evolutionary Conservation ==
[[Category: EDO]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: ZN]]
Check<jmol>
[[Category: alpha-beta-alpha sandwich]]
  <jmolCheckbox>
[[Category: mcsg]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pd/2pdo_consurf.spt"</scriptWhenChecked>
[[Category: midwest center for structural genomics]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: protein structure initiative]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: psi-2]]
  </jmolCheckbox>
[[Category: structural genomics]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pdo ConSurf].
 
<div style="clear:both"></div>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:36:40 2008''
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Shigella flexneri 2a str. 2457t]]
[[Category: Holzle, D]]
[[Category: Joachimiak, A]]
[[Category: Kim, Y]]
[[Category: Li, H]]
[[Category: Structural genomic]]
[[Category: Alpha-beta-alpha sandwich]]
[[Category: Mcsg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Transferase]]

Latest revision as of 18:21, 17 June 2021

Crystal Structure of the Putative Acetyltransferase of GNAT Family from Shigella flexneriCrystal Structure of the Putative Acetyltransferase of GNAT Family from Shigella flexneri

Structural highlights

2pdo is a 8 chain structure with sequence from Shigella flexneri 2a str. 2457t. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:, ,
NonStd Res:
Gene:ypeA, SF2487, S_2635 (Shigella flexneri 2a str. 2457T)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2pdo, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA