2pkh: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2pkh.gif|left|200px]]<br /><applet load="2pkh" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2pkh, resolution 1.95&Aring;" />
-'''Structural Genomics, the crystal structure of the C-terminal domain of histidine utilization repressor from Pseudomonas syringae pv. tomato str. DC3000'''<br />
-==About this Structure==
+==Structural Genomics, the crystal structure of the C-terminal domain of histidine utilization repressor from Pseudomonas syringae pv. tomato str. DC3000==
-PKH is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._dc3000 Pseudomonas syringae pv. tomato str. dc3000] with <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PKH OCA].
+<StructureSection load='2pkh' size='340' side='right'caption='[[2pkh]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
-[[Category: Pseudomonas syringae pv. tomato str. dc3000]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2pkh]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas syringae pv. tomato str. DC3000]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PKH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PKH FirstGlance]. <br>
-[[Category: Clancy, S.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
-[[Category: Joachimiak, A.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pkh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pkh OCA], [https://pdbe.org/2pkh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pkh RCSB], [https://www.ebi.ac.uk/pdbsum/2pkh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pkh ProSAT], [https://www.topsan.org/Proteins/MCSG/2pkh TOPSAN]</span></td></tr>
-[[Category: Tan, K.]]
+</table>
-[[Category: Zhou, M.]]
+== Function ==
-[[Category: EDO]]
+[https://www.uniprot.org/uniprot/Q87UX0_PSESM Q87UX0_PSESM]
-[[Category: apc84836]]
+== Evolutionary Conservation ==
-[[Category: histidine utilization repressor]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: mcsg]]
+Check<jmol>
-[[Category: midwest center for structural genomics]]
+  <jmolCheckbox>
-[[Category: protein structure initiative]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pk/2pkh_consurf.spt"</scriptWhenChecked>
-[[Category: pseudomonas syringae pv. tomato str. dc3000]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: psi-2]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: structural genomics]]
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pkh ConSurf].
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 15:17:33 2008''
+<div style="clear:both"></div>
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Pseudomonas syringae pv. tomato str. DC3000]]
+[[Category: Clancy S]]
+[[Category: Joachimiak A]]
+[[Category: Tan K]]
+[[Category: Zhou M]]