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New page: left|200px<br /><applet load="2qgn" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qgn, resolution 2.40Å" /> '''Crystal structure of... |
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== | ==Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from Bacillus halodurans, Northeast Structural Genomics Consortium target BhR41.== | ||
<StructureSection load='2qgn' size='340' side='right'caption='[[2qgn]], [[Resolution|resolution]] 2.40Å' scene=''> | |||
[[Category: | == Structural highlights == | ||
[[Category: | <table><tr><td colspan='2'>[[2qgn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bachd Bachd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QGN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QGN FirstGlance]. <br> | ||
[[Category: | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
[[Category: Abashidze, M | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
[[Category: Acton, T | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">miaA, BH2366 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272558 BACHD])</td></tr> | ||
[[Category: Baran, M | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/tRNA_dimethylallyltransferase tRNA dimethylallyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.75 2.5.1.75] </span></td></tr> | ||
[[Category: Cunningham, K | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qgn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qgn OCA], [https://pdbe.org/2qgn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qgn RCSB], [https://www.ebi.ac.uk/pdbsum/2qgn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qgn ProSAT]</span></td></tr> | ||
[[Category: Forouhar, F | </table> | ||
[[Category: Hunt, J | == Function == | ||
[[Category: Janjua, H | [[https://www.uniprot.org/uniprot/MIAA_BACHD MIAA_BACHD]] Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). | ||
[[Category: Liu, J | == Evolutionary Conservation == | ||
[[Category: Ma, L | [[Image:Consurf_key_small.gif|200px|right]] | ||
[[Category: Montelione, G | Check<jmol> | ||
[[Category: | <jmolCheckbox> | ||
[[Category: Neely, H | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qg/2qgn_consurf.spt"</scriptWhenChecked> | ||
[[Category: Rost, B | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
[[Category: Seetharaman, J | <text>to colour the structure by Evolutionary Conservation</text> | ||
[[Category: Shastry, R | </jmolCheckbox> | ||
[[Category: Tong, L | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qgn ConSurf]. | ||
[[Category: Xiao, R | <div style="clear:both"></div> | ||
__TOC__ | |||
[[Category: | </StructureSection> | ||
[[Category: | [[Category: Bachd]] | ||
[[Category: | [[Category: Large Structures]] | ||
[[Category: TRNA dimethylallyltransferase]] | |||
[[Category: | [[Category: Abashidze, M]] | ||
[[Category: Acton, T B]] | |||
[[Category: Baran, M C]] | |||
[[Category: Cunningham, K]] | |||
[[Category: Forouhar, F]] | |||
[[Category: Hunt, J F]] | |||
[[Category: Janjua, H]] | |||
[[Category: Liu, J]] | |||
[[Category: Ma, L C]] | |||
[[Category: Montelione, G T]] | |||
[[Category: Structural genomic]] | |||
[[Category: Neely, H]] | |||
[[Category: Rost, B]] | |||
[[Category: Seetharaman, J]] | |||
[[Category: Shastry, R]] | |||
[[Category: Tong, L]] | |||
[[Category: Xiao, R]] | |||
[[Category: Alpha-beta protein]] | |||
[[Category: Nesg]] | |||
[[Category: PSI, Protein structure initiative]] | |||
[[Category: Transferase]] | |||
Latest revision as of 11:19, 25 June 2021
Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from Bacillus halodurans, Northeast Structural Genomics Consortium target BhR41.Crystal structure of tRNA isopentenylpyrophosphate transferase (BH2366) from Bacillus halodurans, Northeast Structural Genomics Consortium target BhR41.
Structural highlights
Function[MIAA_BACHD] Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Evolutionary Conservation Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf. |
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