1vd0: Difference between revisions

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-[[Image:1vd0.png|left|200px]]
-<!--
+==Capsid stabilizing protein GPD, NMR, 20 Structures==
-The line below this paragraph, containing "STRUCTURE_1vd0", creates the "Structure Box" on the page.
+<StructureSection load='1vd0' size='340' side='right'caption='[[1vd0]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[1vd0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_Lambda Escherichia virus Lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1VD0 FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
--->
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1vd0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1vd0 OCA], [https://pdbe.org/1vd0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1vd0 RCSB], [https://www.ebi.ac.uk/pdbsum/1vd0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1vd0 ProSAT], [https://www.topsan.org/Proteins/RSGI/1vd0 TOPSAN]</span></td></tr>
-{{STRUCTURE_1vd0|  PDB=1vd0  |  SCENE=  }}
+</table>
+== Function ==
-===Capsid stabilizing protein GPD, NMR, 20 Structures===
+[https://www.uniprot.org/uniprot/DECO_LAMBD DECO_LAMBD] Stabilizes the expansion of the capsid head shell after genome packaging. The packaging of viral genome in the procapsid triggers a dramatic reconfiguration of the capsid shell, expanding from roughly 50nm to 60nm while the capsid thickness decreases. 415 capsid decoration protein molecules cooperatively bind the expanded capsid, thereby stabilizing the mature capsid shell.<ref>PMID:18786402</ref> <ref>PMID:21821043</ref> <ref>PMID:8411174</ref>
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
-==About this Structure==
+Check<jmol>
-[[1vd0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_lambda Enterobacteria phage lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1VD0 OCA].
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/1vd0_consurf.spt"</scriptWhenChecked>
-==Reference==
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-<ref group="xtra">PMID:15929002</ref><ref group="xtra">PMID:14739644</ref><references group="xtra"/>
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Enterobacteria phage lambda]]
+  </jmolCheckbox>
-[[Category: Forrer, P.]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1vd0 ConSurf].
-[[Category: Guntert, P.]]
+<div style="clear:both"></div>
-[[Category: Iwai, H.]]
+== References ==
-[[Category: Pluckthun, A.]]
+<references/>
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+__TOC__
-[[Category: Capsid protein]]
+</StructureSection>
-[[Category: National project on protein structural and functional analyse]]
+[[Category: Escherichia virus Lambda]]
-[[Category: Nppsfa]]
+[[Category: Large Structures]]
-[[Category: Riken structural genomics/proteomics initiative]]
+[[Category: Forrer P]]
-[[Category: Rsgi]]
+[[Category: Guntert P]]
-[[Category: Scottish structural proteomics facility]]
+[[Category: Iwai H]]
-[[Category: Sspf]]
+[[Category: Pluckthun A]]
-[[Category: Structural genomic]]
-[[Category: Virus/viral protein]]