2vdg: Difference between revisions

← Older edit

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:2vdg.png|left|200px]]
-<!--
+==Barley Aldose Reductase 1 complex with butanol==
-The line below this paragraph, containing "STRUCTURE_2vdg", creates the "Structure Box" on the page.
+<StructureSection load='2vdg' size='340' side='right'caption='[[2vdg]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2vdg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hordeum_vulgare Hordeum vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VDG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VDG FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1BO:1-BUTANOL'>1BO</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-{{STRUCTURE_2vdg|  PDB=2vdg  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vdg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vdg OCA], [https://pdbe.org/2vdg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vdg RCSB], [https://www.ebi.ac.uk/pdbsum/2vdg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vdg ProSAT]</span></td></tr>
+</table>
-===BARLEY ALDOSE REDUCTASE 1 COMPLEX WITH BUTANOL===
+== Function ==
+[https://www.uniprot.org/uniprot/ALDR_HORVU ALDR_HORVU]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-[[2vdg]] is a 1 chain structure of [[Aldose Reductase]] with sequence from [http://en.wikipedia.org/wiki/Hordeum_vulgare Hordeum vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VDG OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vd/2vdg_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vdg ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Aldose Reductase]]
+*[[Aldose reductase 3D structures|Aldose reductase 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:18300247</ref><ref group="xtra">PMID:1827067</ref><references group="xtra"/>
-[[Category: Aldehyde reductase]]
 [[Category: Hordeum vulgare]]
-[[Category: Christensen, C L.]]
+[[Category: Large Structures]]
-[[Category: Henriksen, A.]]
+[[Category: Christensen CL]]
-[[Category: Olsen, J G.]]
+[[Category: Henriksen A]]
-[[Category: Olsen, O.]]
+[[Category: Olsen JG]]
-[[Category: Pedersen, L.]]
+[[Category: Olsen O]]
-[[Category: Akr4c]]
+[[Category: Pedersen L]]
-[[Category: Aldo-keto reductase]]
-[[Category: Aldose reductase]]
-[[Category: Ligand complex]]
-[[Category: Nadp]]
-[[Category: Oxidoreductase]]
-[[Category: Stress response]]