2qm2: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2qm2.jpg|left|200px]]<br /><applet load="2qm2" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2qm2, resolution 2.09&Aring;" />
-'''Putative HopJ type III effector protein from Vibrio parahaemolyticus'''<br />
-==About this Structure==
+==Putative HopJ type III effector protein from Vibrio parahaemolyticus==
-QM2 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633] with <scene name='pdbligand=K:'>K</scene>, <scene name='pdbligand=NA:'>NA</scene>, <scene name='pdbligand=TRS:'>TRS</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QM2 OCA].
+<StructureSection load='2qm2' size='340' side='right'caption='[[2qm2]], [[Resolution|resolution]] 2.09&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
-[[Category: Vibrio parahaemolyticus rimd 2210633]]
+<table><tr><td colspan='2'>[[2qm2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QM2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QM2 FirstGlance]. <br>
-[[Category: Abdullah, J.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.09&#8491;</td></tr>
-[[Category: Chang, C.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-[[Category: Joachimiak, A.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qm2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qm2 OCA], [https://pdbe.org/2qm2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qm2 RCSB], [https://www.ebi.ac.uk/pdbsum/2qm2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qm2 ProSAT], [https://www.topsan.org/Proteins/MCSG/2qm2 TOPSAN]</span></td></tr>
-[[Category: Kim, Y.]]
+</table>
-[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+== Function ==
-[[Category: Volkart, L.]]
+[https://www.uniprot.org/uniprot/Q87IM6_VIBPA Q87IM6_VIBPA]
-[[Category: GOL]]
+== Evolutionary Conservation ==
-[[Category: K]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: NA]]
+Check<jmol>
-[[Category: TRS]]
+  <jmolCheckbox>
-[[Category: alpha-beta structure]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qm2_consurf.spt"</scriptWhenChecked>
-[[Category: mcsg]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: midwest center for structural genomics]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: protein structure initiative]]
+  </jmolCheckbox>
-[[Category: psi-2]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qm2 ConSurf].
-[[Category: structural genomics]]
+<div style="clear:both"></div>
-[[Category: unknown function]]
+__TOC__
+</StructureSection>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 14:21:58 2008''
+[[Category: Large Structures]]
+[[Category: Vibrio parahaemolyticus RIMD 2210633]]
+[[Category: Abdullah J]]
+[[Category: Chang C]]
+[[Category: Joachimiak A]]
+[[Category: Kim Y]]
+[[Category: Volkart L]]