2p6y: Difference between revisions

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[[Image:2p6y.png|left|200px]]


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==X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.==
The line below this paragraph, containing "STRUCTURE_2p6y", creates the "Structure Box" on the page.
<StructureSection load='2p6y' size='340' side='right'caption='[[2p6y]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2p6y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P6Y FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-->
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
{{STRUCTURE_2p6y|  PDB=2p6y  |  SCENE=  }}
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2nmu|2nmu]], [[2hx0|2hx0]], [[2h6l|2h6l]]</div></td></tr>
 
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VCA0587 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=666 "Bacillo virgola del Koch" Trevisan 1884])</td></tr>
===X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.===
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p6y OCA], [https://pdbe.org/2p6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p6y RCSB], [https://www.ebi.ac.uk/pdbsum/2p6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p6y ProSAT], [https://www.topsan.org/Proteins/NESGC/2p6y TOPSAN]</span></td></tr>
 
</table>
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
[[2p6y]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P6Y OCA].  
Check<jmol>
[[Category: Vibrio cholerae]]
  <jmolCheckbox>
[[Category: Abashidze, M.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p6/2p6y_consurf.spt"</scriptWhenChecked>
[[Category: Acton, T B.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Baran, M C.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Chen, C X.]]
  </jmolCheckbox>
[[Category: Cunningham, K.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p6y ConSurf].
[[Category: Fang, Y.]]
<div style="clear:both"></div>
[[Category: Hunt, J.]]
__TOC__
[[Category: Jayaraman, S.]]
</StructureSection>
[[Category: Kuzin, A P.]]
[[Category: Bacillo virgola del koch trevisan 1884]]
[[Category: Liu, J.]]
[[Category: Large Structures]]
[[Category: Montelione, G T.]]
[[Category: Abashidze, M]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Acton, T B]]
[[Category: Owens, L.]]
[[Category: Baran, M C]]
[[Category: Rost, B.]]
[[Category: Chen, C X]]
[[Category: Tong, L.]]
[[Category: Cunningham, K]]
[[Category: Wang, C.]]
[[Category: Fang, Y]]
[[Category: Xiao, R.]]
[[Category: Hunt, J]]
[[Category: Jayaraman, S]]
[[Category: Kuzin, A P]]
[[Category: Liu, J]]
[[Category: Montelione, G T]]
[[Category: Structural genomic]]
[[Category: Owens, L]]
[[Category: Rost, B]]
[[Category: Tong, L]]
[[Category: Wang, C]]
[[Category: Xiao, R]]
[[Category: Nesg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Q9km02_vibch]]
[[Category: Unknown function]]
[[Category: Vcr80]]

Latest revision as of 18:17, 17 June 2021

X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.X-ray structure of the protein Q9KM02_VIBCH from Vibrio cholerae at the resolution 1.63 A. Northeast Structural Genomics Consortium target VcR80.

Structural highlights

2p6y is a 1 chain structure with sequence from "bacillo_virgola_del_koch"_trevisan_1884 "bacillo virgola del koch" trevisan 1884. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
NonStd Res:
Gene:VCA0587 ("Bacillo virgola del Koch" Trevisan 1884)
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2p6y, resolution 1.63Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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