2nv7: Difference between revisions

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-[[Image:2nv7.jpg|left|200px]]<br /><applet load="2nv7" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2nv7, resolution 2.10&Aring;" />
-'''Crystal Structure of Estrogen Receptor Beta Complexed with WAY-555'''<br />
-==Overview==
+==Crystal Structure of Estrogen Receptor Beta Complexed with WAY-555==
-A series of 4'-hydroxyphenyl-aryl-carbaldehyde oximes (5b) was prepared, and found to have high affinity (4nM) and modest selectivity (39-fold) for, estrogen receptor-beta (ERbeta). Substitution of one of the core rings of, the scaffold based around these novel ligands further expanded our, knowledge in the quest toward achieving high affinity and selectivity for, ERbeta. An X-ray co-crystal of structure 11 revealed that the oxime moiety, was mimicking the C-ring of genistein, as previously predicted by SAR and, docking studies.
+<StructureSection load='2nv7' size='340' side='right'caption='[[2nv7]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2nv7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NV7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NV7 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=555:4-(4-HYDROXYPHENYL)-1-NAPHTHALDEHYDE+OXIME'>555</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nv7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nv7 OCA], [https://pdbe.org/2nv7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nv7 RCSB], [https://www.ebi.ac.uk/pdbsum/2nv7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nv7 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/ESR2_HUMAN ESR2_HUMAN] Nuclear hormone receptor. Binds estrogens with an affinity similar to that of ESR1, and activates expression of reporter genes containing estrogen response elements (ERE) in an estrogen-dependent manner. Isoform beta-cx lacks ligand binding ability and has no or only very low ere binding activity resulting in the loss of ligand-dependent transactivation ability. DNA-binding by ESR1 and ESR2 is rapidly lost at 37 degrees Celsius in the absence of ligand while in the presence of 17 beta-estradiol and 4-hydroxy-tamoxifen loss in DNA-binding at elevated temperature is more gradual.
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nv/2nv7_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nv7 ConSurf].
+<div style="clear:both"></div>
-==About this Structure==
+==See Also==
-NV7 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=555:'>555</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Histone_acetyltransferase Histone acetyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.1.48 2.3.1.48] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NV7 OCA].
+*[[Estrogen receptor 3D structures|Estrogen receptor 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-ERbeta ligands. Part 5: synthesis and structure-activity relationships of a series of 4'-hydroxyphenyl-aryl-carbaldehyde oxime derivatives., Mewshaw RE, Bowen SM, Harris HA, Xu ZB, Manas ES, Cohn ST, Bioorg Med Chem Lett. 2007 Feb 15;17(4):902-6. Epub 2006 Dec 1. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17188490 17188490]
-[[Category: Histone acetyltransferase]]
 [[Category: Homo sapiens]]
-[[Category: Protein complex]]
+[[Category: Large Structures]]
-[[Category: Bowen, M.S.]]
+[[Category: Bowen MS]]
-[[Category: Cohn, S.T.]]
+[[Category: Cohn ST]]
-[[Category: Harris, H.A.]]
+[[Category: Harris HA]]
-[[Category: Manas, E.S.]]
+[[Category: Manas ES]]
-[[Category: Mewshaw, R.E.]]
+[[Category: Mewshaw RE]]
-[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+[[Category: Xu ZB]]
-[[Category: Xu, Z.B.]]
-[[Category: 555]]
-[[Category: agonist]]
-[[Category: er]]
-[[Category: er-beta]]
-[[Category: estrogen]]
-[[Category: estrogen receptor]]
-[[Category: estrogen receptor beta]]
-[[Category: national project on protein structural and functional analyses]]
-[[Category: nppsfa]]
-[[Category: nuclear receptor]]
-[[Category: riken structural genomics/proteomics initiative]]
-[[Category: rsgi]]
-[[Category: structural genomics]]
-[[Category: transcription factor]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 14:01:26 2008''