2qma: Difference between revisions

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New page: left|200px<br /><applet load="2qma" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qma, resolution 1.81Å" /> '''Crystal structure of...
 
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[[Image:2qma.jpg|left|200px]]<br /><applet load="2qma" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2qma, resolution 1.81&Aring;" />
'''Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus'''<br />


==About this Structure==
==Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus==
2QMA is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633] with <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMA OCA].
<StructureSection load='2qma' size='340' side='right'caption='[[2qma]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Vibrio parahaemolyticus rimd 2210633]]
<table><tr><td colspan='2'>[[2qma]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QMA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QMA FirstGlance]. <br>
[[Category: Gu, M.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
[[Category: Joachimiak, A.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qma FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qma OCA], [https://pdbe.org/2qma PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qma RCSB], [https://www.ebi.ac.uk/pdbsum/2qma PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qma ProSAT], [https://www.topsan.org/Proteins/MCSG/2qma TOPSAN]</span></td></tr>
[[Category: Osipiuk, J.]]
</table>
[[Category: Sather, A.]]
== Function ==
[[Category: EDO]]
[https://www.uniprot.org/uniprot/Q87NC6_VIBPA Q87NC6_VIBPA]  
[[Category: aminotransferase]]
== Evolutionary Conservation ==
[[Category: apc91511.1]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: glutamate decarboxylase]]
Check<jmol>
[[Category: mcsg]]
  <jmolCheckbox>
[[Category: midwest center for structural genomics]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qma_consurf.spt"</scriptWhenChecked>
[[Category: protein structure initiative]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: psi-2]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: pyridoxal phosphate]]
  </jmolCheckbox>
[[Category: pyruvate]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qma ConSurf].
[[Category: structural genomics]]
<div style="clear:both"></div>
[[Category: transferase]]
__TOC__
 
</StructureSection>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:57:46 2008''
[[Category: Large Structures]]
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
[[Category: Gu M]]
[[Category: Joachimiak A]]
[[Category: Osipiuk J]]
[[Category: Sather A]]

Latest revision as of 08:28, 17 October 2024

Crystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticusCrystal structure of glutamate decarboxylase domain of diaminobutyrate-pyruvate transaminase and L-2,4-diaminobutyrate decarboxylase from Vibrio parahaemolyticus

Structural highlights

2qma is a 2 chain structure with sequence from Vibrio parahaemolyticus RIMD 2210633. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.81Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

Q87NC6_VIBPA

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2qma, resolution 1.81Å

Drag the structure with the mouse to rotate

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