2rag: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2rag.jpg|left|200px]]<br /><applet load="2rag" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2rag, resolution 2.00&Aring;" />
-'''Crystal structure of aminohydrolase from Caulobacter crescentus'''<br />
-==About this Structure==
+==Crystal structure of aminohydrolase from Caulobacter crescentus==
-RAG is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Caulobacter_crescentus_cb15 Caulobacter crescentus cb15] with <scene name='pdbligand=ZN:'>ZN</scene> and <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAG OCA].
+<StructureSection load='2rag' size='340' side='right'caption='[[2rag]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-[[Category: Caulobacter crescentus cb15]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RAG FirstGlance]. <br>
-[[Category: Almo, S.C.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-[[Category: Burley, S.K.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-[[Category: Fedorov, A.A.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rag FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rag OCA], [https://pdbe.org/2rag PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rag RCSB], [https://www.ebi.ac.uk/pdbsum/2rag PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rag ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rag TOPSAN]</span></td></tr>
-[[Category: Fedorov, E.V.]]
+</table>
-[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+== Evolutionary Conservation ==
-[[Category: Sauder, J.M.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Toro, R.]]
+Check<jmol>
-[[Category: CL]]
+  <jmolCheckbox>
-[[Category: ZN]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ra/2rag_consurf.spt"</scriptWhenChecked>
-[[Category: aminohydrolase]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-[[Category: new york structural genomix research consortium]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: nysgxrc]]
+  </jmolCheckbox>
-[[Category: protein structure initiative]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rag ConSurf].
-[[Category: psi-2]]
+<div style="clear:both"></div>
-[[Category: structural genomics]]
+__TOC__
-[[Category: target 9257a]]
+</StructureSection>
+[[Category: Large Structures]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:22:34 2008''
+[[Category: Almo SC]]
+[[Category: Burley SK]]
+[[Category: Fedorov AA]]
+[[Category: Fedorov EV]]
+[[Category: Sauder JM]]
+[[Category: Toro R]]