2pcq: Difference between revisions

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New page: left|200px<br /><applet load="2pcq" size="350" color="white" frame="true" align="right" spinBox="true" caption="2pcq, resolution 2.10Å" /> '''Crystal structure of...
 
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[[Image:2pcq.jpg|left|200px]]<br /><applet load="2pcq" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2pcq, resolution 2.10&Aring;" />
'''Crystal structure of putative dihidrodipicolinate synthase (TTHA0737) from Thermus Thermophilus HB8'''<br />


==About this Structure==
==Crystal structure of putative dihydrodipicolinate synthase (TTHA0737) from Thermus Thermophilus HB8==
2PCQ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=K:'>K</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Dihydrodipicolinate_synthase Dihydrodipicolinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.52 4.2.1.52] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PCQ OCA].  
<StructureSection load='2pcq' size='340' side='right'caption='[[2pcq]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
[[Category: Dihydrodipicolinate synthase]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2pcq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thet8 Thet8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PCQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PCQ FirstGlance]. <br>
[[Category: Thermus thermophilus]]
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
[[Category: Ebihara, A.]]
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Jeyakanthan, J.]]
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/4-hydroxy-tetrahydrodipicolinate_synthase 4-hydroxy-tetrahydrodipicolinate synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.7 4.3.3.7] </span></td></tr>
[[Category: Kanaujia, S.P.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pcq OCA], [https://pdbe.org/2pcq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pcq RCSB], [https://www.ebi.ac.uk/pdbsum/2pcq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pcq ProSAT], [https://www.topsan.org/Proteins/RSGI/2pcq TOPSAN]</span></td></tr>
[[Category: Kitamura, Y.]]
</table>
[[Category: Kuramitsu, S.]]
== Evolutionary Conservation ==
[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Ranjani, C.Vasuki.]]
Check<jmol>
[[Category: Sekar, K.]]
  <jmolCheckbox>
[[Category: Shinkai, A.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pc/2pcq_consurf.spt"</scriptWhenChecked>
[[Category: Shiro, Y.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Yokoyama, S.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: GOL]]
  </jmolCheckbox>
[[Category: K]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pcq ConSurf].
[[Category: dihydrodipicoliante]]
<div style="clear:both"></div>
[[Category: lyase]]
__TOC__
[[Category: lysine biosynthesis]]
</StructureSection>
[[Category: national project on protein structural and functional analyses]]
[[Category: 4-hydroxy-tetrahydrodipicolinate synthase]]
[[Category: nppsfa]]
[[Category: Large Structures]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: Thet8]]
[[Category: rsgi]]
[[Category: Ebihara, A]]
[[Category: structural genomics]]
[[Category: Jeyakanthan, J]]
[[Category: synthase]]
[[Category: Kanaujia, S P]]
 
[[Category: Kitamura, Y]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:20:27 2008''
[[Category: Kuramitsu, S]]
[[Category: Structural genomic]]
[[Category: Ranjani, C Vasuki]]
[[Category: Sekar, K]]
[[Category: Shinkai, A]]
[[Category: Shiro, Y]]
[[Category: Yokoyama, S]]
[[Category: Dihydrodipicoliante]]
[[Category: Lyase]]
[[Category: Lysine biosynthesis]]
[[Category: National project on protein structural and functional analyse]]
[[Category: Nppsfa]]
[[Category: Rsgi]]
[[Category: Synthase]]

Latest revision as of 10:44, 9 March 2022

Crystal structure of putative dihydrodipicolinate synthase (TTHA0737) from Thermus Thermophilus HB8Crystal structure of putative dihydrodipicolinate synthase (TTHA0737) from Thermus Thermophilus HB8

Structural highlights

2pcq is a 1 chain structure with sequence from Thet8. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:,
NonStd Res:
Activity:4-hydroxy-tetrahydrodipicolinate synthase, with EC number 4.3.3.7
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

2pcq, resolution 2.10Å

Drag the structure with the mouse to rotate

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