2pcn: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2pcn.jpg|left|200px]]<br /><applet load="2pcn" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="2pcn, resolution 1.90&Aring;" />
-'''Crystal structure of S-adenosylmethionine: 2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426'''<br />
-==About this Structure==
+==Crystal structure of S-adenosylmethionine: 2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426==
-PCN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Geobacillus_kaustophilus Geobacillus kaustophilus] with <scene name='pdbligand=ACT:'>ACT</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PCN OCA].
+<StructureSection load='2pcn' size='340' side='right'caption='[[2pcn]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-[[Category: Geobacillus kaustophilus]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2pcn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PCN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PCN FirstGlance]. <br>
-[[Category: Agari, Y.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-[[Category: Ebihara, A.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-[[Category: Jeyakanthan, J.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pcn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pcn OCA], [https://pdbe.org/2pcn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pcn RCSB], [https://www.ebi.ac.uk/pdbsum/2pcn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pcn ProSAT], [https://www.topsan.org/Proteins/RSGI/2pcn TOPSAN]</span></td></tr>
-[[Category: Kanaujia, S.P.]]
+</table>
-[[Category: Kuramitsu, S.]]
+== Function ==
-[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
+[https://www.uniprot.org/uniprot/Q5KYY8_GEOKA Q5KYY8_GEOKA]
-[[Category: Rafi, Z.A.]]
+== Evolutionary Conservation ==
-[[Category: Sekar, K.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Shinkai, A.]]
+Check<jmol>
-[[Category: Shiro, Y.]]
+  <jmolCheckbox>
-[[Category: Yokoyama, S.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pc/2pcn_consurf.spt"</scriptWhenChecked>
-[[Category: ACT]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: 2-dimethylmenaquinone methyltransferase]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: beta]]
+  </jmolCheckbox>
-[[Category: beta alpha domain]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pcn ConSurf].
-[[Category: national project on protein structural and functional analyses]]
+<div style="clear:both"></div>
-[[Category: nppsfa]]
+__TOC__
-[[Category: riken structural genomics/proteomics initiative]]
+</StructureSection>
-[[Category: rsgi]]
+[[Category: Geobacillus kaustophilus HTA426]]
-[[Category: structural genomics]]
+[[Category: Large Structures]]
+[[Category: Agari Y]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:20:21 2008''
+[[Category: Ebihara A]]
+[[Category: Jeyakanthan J]]
+[[Category: Kanaujia SP]]
+[[Category: Kuramitsu S]]
+[[Category: Rafi ZA]]
+[[Category: Sekar K]]
+[[Category: Shinkai A]]
+[[Category: Shiro Y]]
+[[Category: Yokoyama S]]