2qrr: Difference between revisions

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OCA

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-[[Image:2qrr.png|left|200px]]
-<!--
+==Crystal structure of the soluble domain of the ABC transporter, ATP-binding protein from Vibrio parahaemolyticus==
-The line below this paragraph, containing "STRUCTURE_2qrr", creates the "Structure Box" on the page.
+<StructureSection load='2qrr' size='340' side='right'caption='[[2qrr]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[2qrr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QRR FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
--->
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_2qrr|  PDB=2qrr  |  SCENE=  }}
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">metN, VP0706 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qrr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qrr OCA], [https://pdbe.org/2qrr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qrr RCSB], [https://www.ebi.ac.uk/pdbsum/2qrr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qrr ProSAT], [https://www.topsan.org/Proteins/MCSG/2qrr TOPSAN]</span></td></tr>
-===Crystal structure of the soluble domain of the ABC transporter, ATP-binding protein from Vibrio parahaemolyticus===
+</table>
+== Function ==
+[[https://www.uniprot.org/uniprot/METN_VIBPA METN_VIBPA]] Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system (By similarity).
-==About this Structure==
+== Evolutionary Conservation ==
-[[2qrr]] is a 2 chain structure of [[ABC transporter]] with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QRR OCA].
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qr/2qrr_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qrr ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[ABC transporter]]
+*[[ABC transporter 3D structures|ABC transporter 3D structures]]
-[[Category: Vibrio parahaemolyticus rimd 2210633]]
+*[[Endonuclease 3D structures|Endonuclease 3D structures]]
-[[Category: Freeman, L.]]
+__TOC__
-[[Category: Joachimiak, A.]]
+</StructureSection>
-[[Category: Kim, Y.]]
+[[Category: Large Structures]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Vibpa]]
-[[Category: Zhou, M.]]
+[[Category: Freeman, L]]
+[[Category: Joachimiak, A]]
+[[Category: Kim, Y]]
+[[Category: Structural genomic]]
+[[Category: Zhou, M]]
 [[Category: Alpha-beta structure]]
 [[Category: Amino-acid transport]]
@@ Line 30: / Line 41: @@
 [[Category: Mcsg]]
 [[Category: Membrane]]
-[[Category: Midwest center for structural genomic]]
 [[Category: Nucleotide-binding]]
-[[Category: Protein structure initiative]]
+[[Category: PSI, Protein structure initiative]]
-[[Category: Psi-2]]
-[[Category: Structural genomic]]
 [[Category: Transport]]