1q0f: Difference between revisions

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[[Image:1q0f.png|left|200px]]


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==Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after partial x-ray-induced reduction==
The line below this paragraph, containing "STRUCTURE_1q0f", creates the "Structure Box" on the page.
<StructureSection load='1q0f' size='340' side='right'caption='[[1q0f]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1q0f]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_seoulensis Streptomyces seoulensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q0F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q0F FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3NI:NICKEL+(III)+ION'>3NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_1q0f|  PDB=1q0f  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q0f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q0f OCA], [https://pdbe.org/1q0f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q0f RCSB], [https://www.ebi.ac.uk/pdbsum/1q0f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q0f ProSAT]</span></td></tr>
 
</table>
===Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after partial x-ray-induced reduction===
== Function ==
 
[https://www.uniprot.org/uniprot/SODN_STRSO SODN_STRSO]
 
== Evolutionary Conservation ==
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The line below this paragraph, {{ABSTRACT_PUBMED_15173586}}, adds the Publication Abstract to the page
Check<jmol>
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    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q0/1q0f_consurf.spt"</scriptWhenChecked>
{{ABSTRACT_PUBMED_15173586}}
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 
    <text>to colour the structure by Evolutionary Conservation</text>
==About this Structure==
  </jmolCheckbox>
[[1q0f]] is a 12 chain structure of [[Superoxide Dismutase]] with sequence from [http://en.wikipedia.org/wiki/Streptomyces_seoulensis Streptomyces seoulensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q0F OCA].  
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q0f ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Superoxide Dismutase]]
*[[Superoxide dismutase 3D structures|Superoxide dismutase 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:15173586</ref><references group="xtra"/>
[[Category: Large Structures]]
[[Category: Streptomyces seoulensis]]
[[Category: Streptomyces seoulensis]]
[[Category: Superoxide dismutase]]
[[Category: Djinovic Carugo K]]
[[Category: Carugo, K Djinovic.]]
[[Category: Kang S-O]]
[[Category: Kang, S O.]]
[[Category: Lee J-W]]
[[Category: Lee, J W.]]
[[Category: Wuerges J]]
[[Category: Wuerges, J.]]
[[Category: Yim H-S]]
[[Category: Yim, H S.]]
[[Category: Yim Y-I]]
[[Category: Yim, Y I.]]
[[Category: Homohexamer of four-helix bundle]]
[[Category: Oxidoreductase]]

Latest revision as of 11:11, 14 February 2024

Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after partial x-ray-induced reductionCrystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the state after partial x-ray-induced reduction

Structural highlights

1q0f is a 12 chain structure with sequence from Streptomyces seoulensis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

SODN_STRSO

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

1q0f, resolution 2.20Å

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Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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