3dan: Difference between revisions

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-[[Image:3dan.png|left|200px]]
-<!--
+==Crystal Structure of Allene oxide synthase==
-The line below this paragraph, containing "STRUCTURE_3dan", creates the "Structure Box" on the page.
+<StructureSection load='3dan' size='340' side='right'caption='[[3dan]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3dan]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Parthenium_argentatum Parthenium argentatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DAN FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-{{STRUCTURE_3dan|  PDB=3dan  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dan FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dan OCA], [https://pdbe.org/3dan PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dan RCSB], [https://www.ebi.ac.uk/pdbsum/3dan PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dan ProSAT]</span></td></tr>
+</table>
-===Crystal Structure of Allene oxide synthase===
+== Function ==
+[https://www.uniprot.org/uniprot/C74A2_PARAR C74A2_PARAR] Involved in the biosynthesis of jasmonic acid, a growth regulator that is implicated also as a signaling molecule in plant defense. Acts on a number of unsaturated fatty-acid hydroperoxides, forming the corresponding allene oxides (By similarity).
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_18787124}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 18787124 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/da/3dan_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_18787124}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-[[3dan]] is a 1 chain structure of [[Cytochrome P450]] with sequence from [http://en.wikipedia.org/wiki/Parthenium_argentatum Parthenium argentatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DAN OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dan ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Cytochrome P450]]
+*[[Cytochrome P450 3D structures|Cytochrome P450 3D structures]]
+__TOC__
-==Reference==
+</StructureSection>
-<ref group="xtra">PMID:18787124</ref><references group="xtra"/>
+[[Category: Large Structures]]
-[[Category: Hydroperoxide dehydratase]]
 [[Category: Parthenium argentatum]]
-[[Category: Li, L.]]
+[[Category: Li L]]
-[[Category: Wang, X.]]
+[[Category: Wang X]]
-[[Category: Aos heme cytochrome p450 structure]]
-[[Category: Fatty acid biosynthesis]]
-[[Category: Heme]]
-[[Category: Iron]]
-[[Category: Lipid synthesis]]
-[[Category: Lyase]]
-[[Category: Metal-binding]]
-[[Category: Oxylipin biosynthesis]]