3fvb: Difference between revisions

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[[Image:3fvb.png|left|200px]]


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==Crystal structure of ferritin (bacterioferritin) from Brucella melitensis==
The line below this paragraph, containing "STRUCTURE_3fvb", creates the "Structure Box" on the page.
<StructureSection load='3fvb' size='340' side='right'caption='[[3fvb]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3fvb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Brucella_abortus_2308 Brucella abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FVB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FVB FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.806&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
{{STRUCTURE_3fvb|  PDB=3fvb  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fvb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fvb OCA], [https://pdbe.org/3fvb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fvb RCSB], [https://www.ebi.ac.uk/pdbsum/3fvb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fvb ProSAT]</span></td></tr>
 
</table>
===Crystal structure of ferritin (bacterioferritin) from Brucella melitensis===
== Function ==
 
[https://www.uniprot.org/uniprot/Q2YKI4_BRUA2 Q2YKI4_BRUA2] Iron-storage protein (By similarity).  Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex (By similarity).[PIRNR:PIRNR002560]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
[[3fvb]] is a 2 chain structure of [[Ferritin]] with sequence from [http://en.wikipedia.org/wiki/Brucella_melitensis_biovar_abortus_2308 Brucella melitensis biovar abortus 2308]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FVB OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fv/3fvb_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fvb ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Ferritin]]
*[[Ferritin 3D structures|Ferritin 3D structures]]
[[Category: Brucella melitensis biovar abortus 2308]]
__TOC__
[[Category: SSGCID, Seattle Structural Genomics Center for Infectious Disease.]]
</StructureSection>
[[Category: Decode]]
[[Category: Brucella abortus 2308]]
[[Category: Ferritin]]
[[Category: Large Structures]]
[[Category: Metal binding protein]]
[[Category: Niaid]]
[[Category: Seattle structural genomics center for infectious disease]]
[[Category: Ssgcid]]
[[Category: Structural genomic]]

Latest revision as of 09:52, 6 September 2023

Crystal structure of ferritin (bacterioferritin) from Brucella melitensisCrystal structure of ferritin (bacterioferritin) from Brucella melitensis

Structural highlights

3fvb is a 2 chain structure with sequence from Brucella abortus 2308. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.806Å
Ligands:, , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q2YKI4_BRUA2 Iron-storage protein (By similarity). Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex (By similarity).[PIRNR:PIRNR002560]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

3fvb, resolution 1.81Å

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OCA
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