3d7n: Difference between revisions

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-[[Image:3d7n.png|left|200px]]
-<!--
+==The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens==
-The line below this paragraph, containing "STRUCTURE_3d7n", creates the "Structure Box" on the page.
+<StructureSection load='3d7n' size='340' side='right'caption='[[3d7n]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3d7n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D7N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D7N FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-{{STRUCTURE_3d7n|  PDB=3d7n  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d7n OCA], [https://pdbe.org/3d7n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d7n RCSB], [https://www.ebi.ac.uk/pdbsum/3d7n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d7n ProSAT], [https://www.topsan.org/Proteins/MCSG/3d7n TOPSAN]</span></td></tr>
+</table>
-===The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens===
+== Function ==
+[https://www.uniprot.org/uniprot/A9CG77_AGRFC A9CG77_AGRFC]
+== Evolutionary Conservation ==
-==About this Structure==
+[[Image:Consurf_key_small.gif|200px|right]]
-[[3d7n]] is a 1 chain structure of [[Flavodoxin]] with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D7N OCA].
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/3d7n_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d7n ConSurf].
+<div style="clear:both"></div>
 ==See Also==
-*[[Flavodoxin]]
+*[[Flavodoxin 3D structures|Flavodoxin 3D structures]]
-[[Category: Agrobacterium tumefaciens str. c58]]
+__TOC__
-[[Category: Edwards, A.]]
+</StructureSection>
-[[Category: Gu, J.]]
+[[Category: Agrobacterium fabrum str. C58]]
-[[Category: Joachimiak, A.]]
+[[Category: Large Structures]]
-[[Category: MCSG, Midwest Center for Structural Genomics.]]
+[[Category: Edwards A]]
-[[Category: Savchenko, A.]]
+[[Category: Gu J]]
-[[Category: Xu, X.]]
+[[Category: Joachimiak A]]
-[[Category: Zhang, R.]]
+[[Category: Savchenko A]]
-[[Category: Electron transport]]
+[[Category: Xu X]]
-[[Category: Flavodoxin]]
+[[Category: Zhang R]]
-[[Category: Mcsg]]
-[[Category: Midwest center for structural genomic]]
-[[Category: Protein structure initiative]]
-[[Category: Psi]]
-[[Category: Structural genomic]]
-[[Category: Wrba-like protein]]