3b76: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:3b76.gif|left|200px]]<br /><applet load="3b76" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="3b76, resolution 1.75&Aring;" />
-'''Crystal structure of the third PDZ domain of human ligand-of-numb protein-X (LNX1) in complex with the C-terminal peptide from the coxsackievirus and adenovirus receptor'''<br />
-==About this Structure==
+==Crystal structure of the third PDZ domain of human ligand-of-numb protein-X (LNX1) in complex with the C-terminal peptide from the coxsackievirus and adenovirus receptor==
-B76 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] with <scene name='pdbligand=NA:'>NA</scene> and <scene name='pdbligand=EDO:'>EDO</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B76 OCA].
+<StructureSection load='3b76' size='340' side='right'caption='[[3b76]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3b76]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B76 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B76 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b76 OCA], [https://pdbe.org/3b76 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b76 RCSB], [https://www.ebi.ac.uk/pdbsum/3b76 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b76 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/LNX1_HUMAN LNX1_HUMAN] E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of NUMB. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates ubiquitination of isoform p66 and isoform p72 of NUMB, but not that of isoform p71 or isoform p65 (By similarity).  Isoform 2 provides an endocytic scaffold for IGSF5/JAM4 (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b7/3b76_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b76 ConSurf].
+<div style="clear:both"></div>
+==See Also==
+*[[Ubiquitin protein ligase 3D structures|Ubiquitin protein ligase 3D structures]]
+__TOC__
+</StructureSection>
 [[Category: Homo sapiens]]
-[[Category: Single protein]]
+[[Category: Large Structures]]
-[[Category: Arrowsmith, C.H.]]
+[[Category: Arrowsmith CH]]
-[[Category: Berridge, G.]]
+[[Category: Berridge G]]
-[[Category: Bunkoczi, G.]]
+[[Category: Bunkoczi G]]
-[[Category: Burgess-Brown, N.]]
+[[Category: Burgess-Brown N]]
-[[Category: Delft, F.von.]]
+[[Category: Doyle D]]
-[[Category: Doyle, D.]]
+[[Category: Edwards AM]]
-[[Category: Edwards, A.M.]]
+[[Category: Elkins J]]
-[[Category: Elkins, J.]]
+[[Category: Gileadi O]]
-[[Category: Gileadi, O.]]
+[[Category: Pike ACW]]
-[[Category: Pike, A.C.W.]]
+[[Category: Sundstrom M]]
-[[Category: SGC, Structural.Genomics.Consortium.]]
+[[Category: Ugochukwu E]]
-[[Category: Sundstrom, M.]]
+[[Category: Weigelt J]]
-[[Category: Ugochukwu, E.]]
+[[Category: Von Delft F]]
-[[Category: Weigelt, J.]]
-[[Category: EDO]]
-[[Category: NA]]
-[[Category: alternative splicing]]
-[[Category: bound ligand]]
-[[Category: cytoplasm]]
-[[Category: domain]]
-[[Category: ligase]]
-[[Category: metal-binding]]
-[[Category: pdz]]
-[[Category: peptide]]
-[[Category: sgc]]
-[[Category: structural genomics]]
-[[Category: structural genomics consortium]]
-[[Category: ubl conjugation pathway]]
-[[Category: unknown function]]
-[[Category: zinc]]
-[[Category: zinc-finger]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:18:36 2008''