3b5m: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:3b5m.jpg|left|200px]]<br /><applet load="3b5m" size="350" color="white" frame="true" align="right" spinBox="true"
-caption="3b5m, resolution 1.21&Aring;" />
-'''Crystal structure of conserved uncharacterized protein from Rhodopirellula baltica'''<br />
-==About this Structure==
+==Crystal structure of conserved uncharacterized protein from Rhodopirellula baltica==
-B5M is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rhodopirellula_baltica Rhodopirellula baltica] with <scene name='pdbligand=SO4:'>SO4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B5M OCA].
+<StructureSection load='3b5m' size='340' side='right'caption='[[3b5m]], [[Resolution|resolution]] 1.21&Aring;' scene=''>
-[[Category: Rhodopirellula baltica]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[3b5m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodopirellula_baltica_SH_1 Rhodopirellula baltica SH 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3B5M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3B5M FirstGlance]. <br>
-[[Category: Almo, S.C.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.21&#8491;</td></tr>
-[[Category: Bonanno, J.B.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-[[Category: Burley, S.K.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3b5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3b5m OCA], [https://pdbe.org/3b5m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3b5m RCSB], [https://www.ebi.ac.uk/pdbsum/3b5m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3b5m ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3b5m TOPSAN]</span></td></tr>
-[[Category: Maletic, M.]]
+</table>
-[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+== Function ==
-[[Category: Patskovsky, Y.]]
+[https://www.uniprot.org/uniprot/Q7UTD8_RHOBA Q7UTD8_RHOBA]
-[[Category: Powell, A.]]
+== Evolutionary Conservation ==
-[[Category: Rodgers, R.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Rutter, M.]]
+Check<jmol>
-[[Category: Sauder, J.M.]]
+  <jmolCheckbox>
-[[Category: Smith, D.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b5/3b5m_consurf.spt"</scriptWhenChecked>
-[[Category: Sridhar, V.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Wasserman, S.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: SO4]]
+  </jmolCheckbox>
-[[Category: flavoprotein]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3b5m ConSurf].
-[[Category: new york structural genomix research consortium]]
+<div style="clear:both"></div>
-[[Category: nysgxrc]]
+__TOC__
-[[Category: protein structure initiative]]
+</StructureSection>
-[[Category: psi-2]]
+[[Category: Large Structures]]
-[[Category: structural genomics]]
+[[Category: Rhodopirellula baltica SH 1]]
-[[Category: unknown function]]
+[[Category: Almo SC]]
+[[Category: Bonanno JB]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:18:14 2008''
+[[Category: Burley SK]]
+[[Category: Maletic M]]
+[[Category: Patskovsky Y]]
+[[Category: Powell A]]
+[[Category: Rodgers R]]
+[[Category: Rutter M]]
+[[Category: Sauder JM]]
+[[Category: Smith D]]
+[[Category: Sridhar V]]
+[[Category: Wasserman S]]