2oog: Difference between revisions

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New page: left|200px<br /><applet load="2oog" size="350" color="white" frame="true" align="right" spinBox="true" caption="2oog, resolution 2.20Å" /> '''Crystal structure of...
 
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[[Image:2oog.gif|left|200px]]<br /><applet load="2oog" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2oog, resolution 2.20&Aring;" />
'''Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus'''<br />


==About this Structure==
==Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus==
2OOG is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus] with <scene name='pdbligand=ZN:'>ZN</scene>, <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Glycerophosphodiester_phosphodiesterase Glycerophosphodiester phosphodiesterase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.4.46 3.1.4.46] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOG OCA].
<StructureSection load='2oog' size='340' side='right'caption='[[2oog]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
[[Category: Glycerophosphodiester phosphodiesterase]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2oog]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_N315 Staphylococcus aureus subsp. aureus N315]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OOG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OOG FirstGlance]. <br>
[[Category: Staphylococcus aureus]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
[[Category: Almo, S.C.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Burley, S.K.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oog FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oog OCA], [https://pdbe.org/2oog PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oog RCSB], [https://www.ebi.ac.uk/pdbsum/2oog PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oog ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2oog TOPSAN]</span></td></tr>
[[Category: Fedorov, E.]]
</table>
[[Category: Freeman, J.]]
== Function ==
[[Category: Gheyi, T.]]
[https://www.uniprot.org/uniprot/A0A0H3K7S1_STAAE A0A0H3K7S1_STAAE]  
[[Category: Maletic, M.]]
== Evolutionary Conservation ==
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Patskovsky, Y.]]
Check<jmol>
[[Category: Powell, A.]]
  <jmolCheckbox>
[[Category: Sauder, J.M.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oo/2oog_consurf.spt"</scriptWhenChecked>
[[Category: Smith, D.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Toro, R.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Wasserman, S.R.]]
  </jmolCheckbox>
[[Category: GOL]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oog ConSurf].
[[Category: SO4]]
<div style="clear:both"></div>
[[Category: ZN]]
[[Category: glycerophosphoryl diester phosphodiesterase]]
[[Category: hydrolase]]
[[Category: new york structural genomix research consortium]]
[[Category: nysgrc]]
[[Category: nysgxrc]]
[[Category: phosphatase]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomics]]


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 12:04:03 2008''
==See Also==
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Staphylococcus aureus subsp. aureus N315]]
[[Category: Almo SC]]
[[Category: Burley SK]]
[[Category: Fedorov E]]
[[Category: Freeman J]]
[[Category: Gheyi T]]
[[Category: Maletic M]]
[[Category: Patskovsky Y]]
[[Category: Powell A]]
[[Category: Sauder JM]]
[[Category: Smith D]]
[[Category: Toro R]]
[[Category: Wasserman SR]]

Latest revision as of 13:46, 30 August 2023

Crystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureusCrystal structure of glycerophosphoryl diester phosphodiesterase from Staphylococcus aureus

Structural highlights

2oog is a 6 chain structure with sequence from Staphylococcus aureus subsp. aureus N315. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.2Å
Ligands:, ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

A0A0H3K7S1_STAAE

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2oog, resolution 2.20Å

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