3mpk: Difference between revisions

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OCA

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-{{Seed}}
-[[Image:3mpk.jpg|left|200px]]
-<!--
+==Crystal Structure of Bordetella pertussis BvgS periplasmic VFT2 domain==
-The line below this paragraph, containing "STRUCTURE_3mpk", creates the "Structure Box" on the page.
+<StructureSection load='3mpk' size='340' side='right'caption='[[3mpk]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3mpk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_pertussis_Tohama_I Bordetella pertussis Tohama I]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MPK FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-{{STRUCTURE_3mpk|  PDB=3mpk  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mpk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mpk OCA], [https://pdbe.org/3mpk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mpk RCSB], [https://www.ebi.ac.uk/pdbsum/3mpk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mpk ProSAT]</span></td></tr>
+</table>
-===Crystal Structure of Bordetella pertussis BvgS periplasmic VFT2 domain===
+== Function ==
+[https://www.uniprot.org/uniprot/BVGS_BORPE BVGS_BORPE] Member of the two-component regulatory system BvgS/BvgA. Phosphorylates BvgA via a four-step phosphorelay in response to environmental signals.
+== Evolutionary Conservation ==
-<!--
+[[Image:Consurf_key_small.gif|200px|right]]
-The line below this paragraph, {{ABSTRACT_PUBMED_20855615}}, adds the Publication Abstract to the page
+Check<jmol>
-(as it appears on PubMed at http://www.pubmed.gov), where 20855615 is the PubMed ID number.
+  <jmolCheckbox>
--->
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mp/3mpk_consurf.spt"</scriptWhenChecked>
-{{ABSTRACT_PUBMED_20855615}}
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
-==About this Structure==
+  </jmolCheckbox>
-MPK is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bordetella_pertussis Bordetella pertussis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MPK OCA].
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mpk ConSurf].
+<div style="clear:both"></div>
-==Reference==
+__TOC__
-<ref group="xtra">PMID:20855615</ref><references group="xtra"/>
+</StructureSection>
-[[Category: Bordetella pertussis]]
+[[Category: Bordetella pertussis Tohama I]]
-[[Category: Antoine, R.]]
+[[Category: Large Structures]]
-[[Category: Bompard, C.]]
+[[Category: Antoine R]]
-[[Category: Dupre, E.]]
+[[Category: Bompard C]]
-[[Category: Herrou, J.]]
+[[Category: Dupre E]]
-[[Category: Jacob-Dubuisson, F.]]
+[[Category: Herrou J]]
-[[Category: Locht, C.]]
+[[Category: Jacob-Dubuisson F]]
-[[Category: Villeret, V.]]
+[[Category: Locht C]]
-[[Category: Willery, E.]]
+[[Category: Villeret V]]
-[[Category: Wintjens, R.]]
+[[Category: Willery E]]
-[[Category: Sensor domain]]
+[[Category: Wintjens R]]
-[[Category: Signaling protein]]
-[[Category: Venus flytrap]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Oct  6 06:05:45 2010''