3op2: Difference between revisions

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==Crystal structure of putative mandelate racemase from Bordetella bronchiseptica RB50 complexed with 2-oxoglutarate/phosphate==
The line below this paragraph, containing "STRUCTURE_3op2", creates the "Structure Box" on the page.
<StructureSection load='3op2' size='340' side='right'caption='[[3op2]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3op2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bordetella_bronchiseptica Bordetella bronchiseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OP2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OP2 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
{{STRUCTURE_3op2|  PDB=3op2  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3op2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3op2 OCA], [https://pdbe.org/3op2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3op2 RCSB], [https://www.ebi.ac.uk/pdbsum/3op2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3op2 ProSAT]</span></td></tr>
 
</table>
===Crystal structure of putative mandelate racemase from Bordetella bronchiseptica RB50 complexed with 2-oxoglutarate/phosphate===
== Function ==
 
[https://www.uniprot.org/uniprot/A0A0H3LT39_BORBR A0A0H3LT39_BORBR]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3OP2 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Bordetella_bronchiseptica Bordetella bronchiseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OP2 OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/op/3op2_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3op2 ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Bordetella bronchiseptica]]
[[Category: Bordetella bronchiseptica]]
[[Category: Almo, S C.]]
[[Category: Large Structures]]
[[Category: Burley, S K.]]
[[Category: Almo SC]]
[[Category: Malashkevich, V N.]]
[[Category: Burley SK]]
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
[[Category: Malashkevich VN]]
[[Category: Patskovsky, Y.]]
[[Category: Patskovsky Y]]
[[Category: Ramagopal, U.]]
[[Category: Ramagopal U]]
[[Category: Sauder, J M.]]
[[Category: Sauder JM]]
[[Category: Toro, R.]]
[[Category: Toro R]]
[[Category: 2-oxoglutarate]]
[[Category: Isomerase]]
[[Category: New york sgx research center for structural genomic]]
[[Category: New york structural genomix research consortium]]
[[Category: Nysgxrc]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Racemase]]
[[Category: Structural genomic]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Sep 15 10:56:34 2010''

Latest revision as of 05:13, 21 November 2024

Crystal structure of putative mandelate racemase from Bordetella bronchiseptica RB50 complexed with 2-oxoglutarate/phosphateCrystal structure of putative mandelate racemase from Bordetella bronchiseptica RB50 complexed with 2-oxoglutarate/phosphate

Structural highlights

3op2 is a 2 chain structure with sequence from Bordetella bronchiseptica. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

A0A0H3LT39_BORBR

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3op2, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA
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