3hz3: Difference between revisions

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[[Image:3hz3.jpg|left|200px]]


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==Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex==
The line below this paragraph, containing "STRUCTURE_3hz3", creates the "Structure Box" on the page.
<StructureSection load='3hz3' size='340' side='right'caption='[[3hz3]], [[Resolution|resolution]] 2.22&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3hz3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Limosilactobacillus_reuteri Limosilactobacillus reuteri]. The June 2011 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Glucansucrase''  by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2011_6 10.2210/rcsb_pdb/mom_2011_6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HZ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HZ3 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.22&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
{{STRUCTURE_3hz3|  PDB=3hz3  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hz3 OCA], [https://pdbe.org/3hz3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hz3 RCSB], [https://www.ebi.ac.uk/pdbsum/3hz3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hz3 ProSAT]</span></td></tr>
 
</table>
===Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex===
== Function ==
 
[https://www.uniprot.org/uniprot/Q5SBN3_LIMRT Q5SBN3_LIMRT] Production of extracellular glucans, that are thought to play a key role in the development of the dental plaque because of their ability to adhere to smooth surfaces and mediate the aggregation of bacterial cells and food debris.[ARBA:ARBA00003243]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3HZ3 is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_reuteri Lactobacillus reuteri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HZ3 OCA].  
Check<jmol>
[[Category: Dextransucrase]]
  <jmolCheckbox>
[[Category: Lactobacillus reuteri]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hz/3hz3_consurf.spt"</scriptWhenChecked>
[[Category: Dijkhuizen, L.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Dijkstra, B W.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Eeuwema, W.]]
  </jmolCheckbox>
[[Category: Kralj, S.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hz3 ConSurf].
[[Category: Pijning, T.]]
<div style="clear:both"></div>
[[Category: Vujicic-Zagar, A.]]
__TOC__
[[Category: Glycosyltransferase]]
</StructureSection>
[[Category: Multidomain protein]]
[[Category: Glucansucrase]]
[[Category: Protein-sucrose complex]]
[[Category: Large Structures]]
[[Category: Transferase]]
[[Category: Limosilactobacillus reuteri]]
 
[[Category: RCSB PDB Molecule of the Month]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 30 13:46:15 2010''
[[Category: Dijkhuizen L]]
[[Category: Dijkstra BW]]
[[Category: Eeuwema W]]
[[Category: Kralj S]]
[[Category: Pijning T]]
[[Category: Vujicic-Zagar A]]

Latest revision as of 11:27, 20 March 2024

Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complexLactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex

Structural highlights

3hz3 is a 1 chain structure with sequence from Limosilactobacillus reuteri. The June 2011 RCSB PDB Molecule of the Month feature on Glucansucrase by David Goodsell is 10.2210/rcsb_pdb/mom_2011_6. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.22Å
Ligands:, , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q5SBN3_LIMRT Production of extracellular glucans, that are thought to play a key role in the development of the dental plaque because of their ability to adhere to smooth surfaces and mediate the aggregation of bacterial cells and food debris.[ARBA:ARBA00003243]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3hz3, resolution 2.22Å

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OCA
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