2xd5: Difference between revisions

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-'''Unreleased structure'''
-The entry 2xd5 is ON HOLD
+==Structural insights into the catalytic mechanism and the role of Streptococcus pneumoniae PBP1b==
+<StructureSection load='2xd5' size='340' side='right'caption='[[2xd5]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[2xd5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_R6 Streptococcus pneumoniae R6]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2jci 2jci]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XD5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XD5 FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=S2D:N-BENZOYL-D-ALANINE'>S2D</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xd5 OCA], [https://pdbe.org/2xd5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xd5 RCSB], [https://www.ebi.ac.uk/pdbsum/2xd5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xd5 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q7CRA4_STRR6 Q7CRA4_STRR6]
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xd/2xd5_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xd5 ConSurf].
+<div style="clear:both"></div>
-Authors: Macheboeuf, P., Lemaire, D., Jamin, M., Dideberg, O., Dessen, A.
+==See Also==
+*[[Penicillin-binding protein 3D structures|Penicillin-binding protein 3D structures]]
-Description: Structural insights into the catalytic mechanism and the role of Streptococcus pneumoniae PBP1b
+__TOC__
+</StructureSection>
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 12 10:40:28 2010''
+[[Category: Large Structures]]
+[[Category: Streptococcus pneumoniae R6]]
+[[Category: Dessen A]]
+[[Category: Dideberg O]]
+[[Category: Jamin M]]
+[[Category: Lemaire D]]
+[[Category: Macheboeuf P]]