3a1p: Difference between revisions

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-{{Seed}}
-[[Image:3a1p.jpg|left|200px]]
-<!--
+==Structure of Ribosome maturation protein RimM and Ribosomal protein S19==
-The line below this paragraph, containing "STRUCTURE_3a1p", creates the "Structure Box" on the page.
+<StructureSection load='3a1p' size='340' side='right'caption='[[3a1p]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>[[3a1p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A1P FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
--->
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-{{STRUCTURE_3a1p|  PDB=3a1p  |  SCENE=  }}
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a1p OCA], [https://pdbe.org/3a1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a1p RCSB], [https://www.ebi.ac.uk/pdbsum/3a1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a1p ProSAT], [https://www.topsan.org/Proteins/RSGI/3a1p TOPSAN]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RIMM_THET8 RIMM_THET8] An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes (By similarity).
+== Evolutionary Conservation ==
+[[Image:Consurf_key_small.gif|200px|right]]
+Check<jmol>
+  <jmolCheckbox>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a1/3a1p_consurf.spt"</scriptWhenChecked>
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+    <text>to colour the structure by Evolutionary Conservation</text>
+  </jmolCheckbox>
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a1p ConSurf].
+<div style="clear:both"></div>
-===Structure of Ribosome maturation protein RimM and Ribosomal protein S19===
+==See Also==
+*[[Ribosomal protein S19|Ribosomal protein S19]]
+__TOC__
-==About this Structure==
+</StructureSection>
-A1P is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A1P OCA].
+[[Category: Large Structures]]
-[[Category: Thermus thermophilus]]
+[[Category: Thermus thermophilus HB8]]
-[[Category: Kaminishi, T.]]
+[[Category: Kaminishi T]]
-[[Category: Kawazoe, M.]]
+[[Category: Kawazoe M]]
-[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+[[Category: Shirouzu M]]
-[[Category: Shirouzu, M.]]
+[[Category: Takemoto C]]
-[[Category: Takemoto, C.]]
+[[Category: Tatsuguchi A]]
-[[Category: Tatsuguchi, A.]]
+[[Category: Yokoyama S]]
-[[Category: Yokoyama, S.]]
-[[Category: 16s rrna processing]]
-[[Category: 30s ribosomal subunit]]
-[[Category: Beta barrel]]
-[[Category: Chaperone]]
-[[Category: Cytoplasm]]
-[[Category: National project on protein structural and functional analyse]]
-[[Category: Nppsfa]]
-[[Category: Prc-barrel domain]]
-[[Category: Protein-protein complex]]
-[[Category: Ribonucleoprotein]]
-[[Category: Ribosomal protein]]
-[[Category: Ribosome]]
-[[Category: Ribosome biogenesis]]
-[[Category: Riken structural genomics/proteomics initiative]]
-[[Category: Rimm n-terminal domain]]
-[[Category: Rna-binding]]
-[[Category: Rrna binding]]
-[[Category: Rsgi]]
-[[Category: Structural genomic]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 21 10:49:16 2010''