1bqw: Difference between revisions
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{{Theoretical_model}} | {{Theoretical_model}} | ||
==MOLECULAR MODEL OF A POLYVALENT PEROXIDASE ISOLATED FROM PARTIALLY-DELIGNIFIED LIGNOCELLULOSE WHICH INCLUDES BOTH MNP AND LIP-TYPE BINDING SITES, THEORETICAL MODEL== | |||
<StructureSection load='1bqw' size='340' side='right'caption='[[1bqw]]' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BQW FirstGlance]. <br> | |||
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bqw FirstGlance], [https://www.ebi.ac.uk/pdbsum/1bqw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bqw ProSAT]</span></td></tr> | |||
-- | </table> | ||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
Two major peroxidases are secreted by the fungus Pleurotus eryngii in lignocellulose cultures. One is similar to Phanerochaete chrysosporium manganese-dependent peroxidase. The second protein (PS1), although catalyzing the oxidation of Mn2+ to Mn3+ by H2O2, differs from the above enzymes by its manganese-independent activity enabling it to oxidize substituted phenols and synthetic dyes, as well as the lignin peroxidase (LiP) substrate veratryl alcohol. This is by a mechanism similar to that reported for LiP, as evidenced by p-dimethoxybenzene oxidation yielding benzoquinone. The apparent kinetic constants showed high activity on Mn2+, but methoxyhydroquinone was the natural substrate with the highest enzyme affinity (this and other phenolic substrates are not efficiently oxidized by the P. chrysosporium peroxidases). A three-dimensional model was built using crystal models from four fungal peroxidase as templates. The model suggests high structural affinity of this versatile peroxidase with LiP but shows a putative Mn2+ binding site near the internal heme propionate, involving Glu36, Glu40, and Asp181. A specific substrate interaction site for Mn2+ is supported by kinetic data showing noncompetitive inhibition with other peroxidase substrates. Moreover, residues reported as involved in LiP interaction with veratryl alcohol and other aromatic substrates are present in peroxidase PS1 such as His82 at the heme-channel opening, which is remarkably similar to that of P. chrysosporium LiP, and Trp170 at the protein surface. These residues could be involved in two different hypothetical long range electron transfer pathways from substrate (His82-Ala83-Asn84-His47-heme and Trp170-Leu171-heme) similar to those postulated for LiP. | |||
Description of a versatile peroxidase involved in the natural degradation of lignin that has both manganese peroxidase and lignin peroxidase substrate interaction sites.,Camarero S, Sarkar S, Ruiz-Duenas FJ, Martinez MJ, Martinez AT J Biol Chem. 1999 Apr 9;274(15):10324-30. PMID:10187820<ref>PMID:10187820</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 1bqw" style="background-color:#fffaf0;"></div> | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
== | [[Category: Theoretical Model]] | ||
[[Category: Large Structures]] | |||
== | |||
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[[Category: Camarero, S]] | [[Category: Camarero, S]] | ||
[[Category: Martinez, A T]] | [[Category: Martinez, A T]] | ||
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[[Category: Ruiz-Duenas, F J]] | [[Category: Ruiz-Duenas, F J]] | ||
[[Category: Sarkar, S]] | [[Category: Sarkar, S]] | ||