1abl: Difference between revisions

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 {{Theoretical_model}}
-{{Seed}}
-[[Image:1abl.png|left|200px]]
-<!--
+==HOMOLOGY MODELING OF THE ABL-SH3 DOMAIN==
-The line below this paragraph, containing "STRUCTURE_1abl", creates the "Structure Box" on the page.
+<StructureSection load='1abl' size='340' side='right'caption='[[1abl]]' scene=''>
-You may change the PDB parameter (which sets the PDB file loaded into the applet)
+== Structural highlights ==
-or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ABL FirstGlance]. <br>
-or leave the SCENE parameter empty for the default display.
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1abl FirstGlance], [https://www.ebi.ac.uk/pdbsum/1abl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1abl ProSAT]</span></td></tr>
--->
+</table>
-{{STRUCTURE_1abl|  PDB=1abl  |  SCENE=  }}
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+A tertiary structure model of the Abl-SH3 domain is predicted by using homology modeling techniques coupled to molecular dynamics simulations. Two template proteins were used, Fyn-SH3 and Spc-SH3. The refined model was extensively checked for errors using criteria based on stereochemistry, packing, solvation free-energy, accessible surface areas, and contact analyses. The different checking methods do not totally agree, as each one evaluates a different characteristic of protein structures. Several zones of the protein are more susceptible to incorporating errors. These include residues 13, 15, 35, 39, 45, 46, 50, and 60. An interesting finding is that the measurement of the C alpha chirality correlated well with the rest of the criteria, suggesting that this parameter might be a good indicator of correct local conformation. Deviations of more than 4 degrees may be indicative of poor local structure.
-===HOMOLOGY MODELING OF THE ABL-SH3 DOMAIN===
+Homology modeling of the Abl-SH3 domain.,Pisabarro MT, Ortiz AR, Serrano L, Wade RC Proteins. 1994 Nov;20(3):203-15. PMID:7892170<ref>PMID:7892170</ref>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-<!--
+</div>
-The line below this paragraph, {{ABSTRACT_PUBMED_7892170}}, adds the Publication Abstract to the page
+<div class="pdbe-citations 1abl" style="background-color:#fffaf0;"></div>
-(as it appears on PubMed at http://www.pubmed.gov), where 7892170 is the PubMed ID number.
+== References ==
--->
+<references/>
-{{ABSTRACT_PUBMED_7892170}}
+__TOC__
+</StructureSection>
-==About this Structure==
+[[Category: Theoretical Model]]
-Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ABL OCA].
+[[Category: Large Structures]]
-==Reference==
-<ref group="xtra">PMID:7892170</ref><references group="xtra"/>
 [[Category: Ortiz, A R]]
 [[Category: Pisabarro, M T]]
 [[Category: Serrano, L]]
 [[Category: Wade, R C]]
-''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr  8 08:24:34 2010''