3fdj: Difference between revisions

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[[Image:3fdj.png|left|200px]]


<!--
==The structure of a DegV family protein from Eubacterium eligens.==
The line below this paragraph, containing "STRUCTURE_3fdj", creates the "Structure Box" on the page.
<StructureSection load='3fdj' size='340' side='right'caption='[[3fdj]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3fdj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lachnospira_eligens Lachnospira eligens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FDJ FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=P6G:HEXAETHYLENE+GLYCOL'>P6G</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
{{STRUCTURE_3fdj|  PDB=3fdj  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fdj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fdj OCA], [https://pdbe.org/3fdj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fdj RCSB], [https://www.ebi.ac.uk/pdbsum/3fdj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fdj ProSAT], [https://www.topsan.org/Proteins/MCSG/3fdj TOPSAN]</span></td></tr>
 
</table>
===The structure of a DegV family protein from Eubacterium eligens.===
== Function ==
 
[https://www.uniprot.org/uniprot/D0VX07_9FIRM D0VX07_9FIRM] May bind long-chain fatty acids, such as palmitate, and may play a role in lipid transport or fatty acid metabolism.[ARBA:ARBA00003238]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3FDJ is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Eubacterium_eligens Eubacterium eligens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FDJ OCA].  
Check<jmol>
[[Category: Eubacterium eligens]]
  <jmolCheckbox>
[[Category: Cuff, M E.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fd/3fdj_consurf.spt"</scriptWhenChecked>
[[Category: Freeman, L.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Hendricks, R.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Joachimiak, A.]]
  </jmolCheckbox>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fdj ConSurf].
[[Category: Degv]]
<div style="clear:both"></div>
[[Category: Gut microbiome]]
__TOC__
[[Category: Mcsg]]
</StructureSection>
[[Category: Midwest center for structural genomic]]
[[Category: Lachnospira eligens]]
[[Category: Protein structure initiative]]
[[Category: Large Structures]]
[[Category: Psi-2]]
[[Category: Cuff ME]]
[[Category: Structural genomic]]
[[Category: Freeman L]]
[[Category: Unknown function]]
[[Category: Hendricks R]]
 
[[Category: Joachimiak A]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar 10 15:12:09 2010''

Latest revision as of 08:49, 17 October 2024

The structure of a DegV family protein from Eubacterium eligens.The structure of a DegV family protein from Eubacterium eligens.

Structural highlights

3fdj is a 1 chain structure with sequence from Lachnospira eligens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 1.8Å
Ligands:, , , , ,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN

Function

D0VX07_9FIRM May bind long-chain fatty acids, such as palmitate, and may play a role in lipid transport or fatty acid metabolism.[ARBA:ARBA00003238]

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3fdj, resolution 1.80Å

Drag the structure with the mouse to rotate

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OCA
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