3lgx: Difference between revisions

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[[Image:3lgx.jpg|left|200px]]


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==Structure of probable D-alanine-poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes with ATP==
The line below this paragraph, containing "STRUCTURE_3lgx", creates the "Structure Box" on the page.
<StructureSection load='3lgx' size='340' side='right'caption='[[3lgx]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3lgx]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_M1_GAS Streptococcus pyogenes M1 GAS]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LGX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LGX FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr>
{{STRUCTURE_3lgx|  PDB=3lgx  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lgx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lgx OCA], [https://pdbe.org/3lgx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lgx RCSB], [https://www.ebi.ac.uk/pdbsum/3lgx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lgx ProSAT]</span></td></tr>
 
</table>
===Structure of probable D-alanine-poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes with ATP===
== Function ==
 
[https://www.uniprot.org/uniprot/DLTA_STRP1 DLTA_STRP1] Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
3LGX is a 4 chains structure with sequences from [http://en.wikipedia.org/wiki/Streptococcus_pyogenes Streptococcus pyogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LGX OCA].  
Check<jmol>
[[Category: Streptococcus pyogenes]]
  <jmolCheckbox>
[[Category: Almo, S C.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lg/3lgx_consurf.spt"</scriptWhenChecked>
[[Category: Burley, S K.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Ramagopal, U A.]]
  </jmolCheckbox>
[[Category: Toro, R.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lgx ConSurf].
[[Category: Atp binding protein]]
<div style="clear:both"></div>
[[Category: Atp-binding]]
__TOC__
[[Category: Cytoplasm]]
</StructureSection>
[[Category: New york sgx research center for structural genomic]]
[[Category: Large Structures]]
[[Category: Nucleotide-binding]]
[[Category: Streptococcus pyogenes M1 GAS]]
[[Category: Nysgxrc]]
[[Category: Almo SC]]
[[Category: Protein structure initiative]]
[[Category: Burley SK]]
[[Category: Psi-2]]
[[Category: Ramagopal UA]]
[[Category: Structural genomic]]
[[Category: Toro R]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar  3 17:22:15 2010''

Latest revision as of 11:36, 6 September 2023

Structure of probable D-alanine-poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes with ATPStructure of probable D-alanine-poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes with ATP

Structural highlights

3lgx is a 4 chain structure with sequence from Streptococcus pyogenes M1 GAS. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.6Å
Ligands:
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

DLTA_STRP1 Involved in the biosynthesis of D-alanyl-lipoteichoic acid (LTA). Catalyzes an ATP-dependent two-step reaction where it forms a high energy D-alanyl AMP intermediate and transfers the alanyl residues from AMP to Dcp (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

3lgx, resolution 2.60Å

Drag the structure with the mouse to rotate

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OCA
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