2ri1: Difference between revisions

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[[Image:2ri1.png|left|200px]]


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==Crystal Structure of glucosamine 6-phosphate deaminase (NagB) with GlcN6P from S. mutans==
The line below this paragraph, containing "STRUCTURE_2ri1", creates the "Structure Box" on the page.
<StructureSection load='2ri1' size='340' side='right'caption='[[2ri1]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2ri1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RI1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RI1 FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>BTB</scene>, <scene name='pdbligand=GLP:GLUCOSAMINE+6-PHOSPHATE'>GLP</scene></td></tr>
{{STRUCTURE_2ri1| PDB=2ri1 |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ri1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ri1 OCA], [https://pdbe.org/2ri1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ri1 RCSB], [https://www.ebi.ac.uk/pdbsum/2ri1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ri1 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/NAGB_STRMU NAGB_STRMU] Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ri/2ri1_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ri1 ConSurf].
<div style="clear:both"></div>


===Crystal Structure of glucosamine 6-phosphate deaminase (NagB) with GlcN6P from S. mutans===
==See Also==
 
*[[Deaminase 3D structures|Deaminase 3D structures]]
 
__TOC__
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</StructureSection>
The line below this paragraph, {{ABSTRACT_PUBMED_18436239}}, adds the Publication Abstract to the page
[[Category: Large Structures]]
(as it appears on PubMed at http://www.pubmed.gov), where 18436239 is the PubMed ID number.
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{{ABSTRACT_PUBMED_18436239}}
 
==About this Structure==
2RI1 is a 2 chains structure with sequences from [http://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RI1 OCA].
 
==Reference==
<ref group="xtra">PMID:18436239</ref><references group="xtra"/>
[[Category: Glucosamine-6-phosphate deaminase]]
[[Category: Streptococcus mutans]]
[[Category: Streptococcus mutans]]
[[Category: Li, D.]]
[[Category: Li D]]
[[Category: Liu, C.]]
[[Category: Liu C]]
[[Category: Su, X D.]]
[[Category: Su XD]]
[[Category: Carbohydrate metabolism]]
[[Category: Glucosamine 6-phosphate deaminase]]
[[Category: Hydrolase]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Mar  3 13:04:26 2010''

Latest revision as of 16:54, 13 March 2024

Crystal Structure of glucosamine 6-phosphate deaminase (NagB) with GlcN6P from S. mutansCrystal Structure of glucosamine 6-phosphate deaminase (NagB) with GlcN6P from S. mutans

Structural highlights

2ri1 is a 2 chain structure with sequence from Streptococcus mutans. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:X-ray diffraction, Resolution 2.03Å
Ligands:,
Resources:FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NAGB_STRMU Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion (By similarity).

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

See Also

2ri1, resolution 2.03Å

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