2rdx: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2rdx.jpg|left|200px]]<br /><applet load="2rdx" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="2rdx, resolution 2.00&Aring;" />
-'''Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM'''<br />
-==About this Structure==
+==Crystal structure of mandelate racemase/muconate lactonizing enzyme from Roseovarius nubinhibens ISM==
-RDX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ism Roseovarius nubinhibens ism] with MG and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. This structure superseeds the now removed PDB entry 2QYE. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2RDX OCA].
+<StructureSection load='2rdx' size='340' side='right'caption='[[2rdx]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-[[Category: Roseovarius nubinhibens ism]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[2rdx]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Roseovarius_nubinhibens_ISM Roseovarius nubinhibens ISM]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2qye 2qye]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDX FirstGlance]. <br>
-[[Category: Almo, S.C.]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-[[Category: Bonanno, J.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-[[Category: Burley, S.K.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdx OCA], [https://pdbe.org/2rdx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdx RCSB], [https://www.ebi.ac.uk/pdbsum/2rdx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdx ProSAT]</span></td></tr>
-[[Category: Gerlt, J.A.]]
+</table>
-[[Category: Gheyi, T.]]
+== Function ==
-[[Category: Gilmore, M.]]
+[https://www.uniprot.org/uniprot/A3SNF8_ROSNI A3SNF8_ROSNI]
-[[Category: Koss, J.]]
+== Evolutionary Conservation ==
-[[Category: Lau, C.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Maletic, M.]]
+Check<jmol>
-[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+  <jmolCheckbox>
-[[Category: Ozyurt, S.]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdx_consurf.spt"</scriptWhenChecked>
-[[Category: Patskovsky, Y.]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: Sauder, J.M.]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: Wasserman, S.R.]]
+  </jmolCheckbox>
-[[Category: GOL]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rdx ConSurf].
-[[Category: MG]]
+<div style="clear:both"></div>
-[[Category: enolase]]
-[[Category: new york structural genomics research consortium]]
-[[Category: new york structural genomix research consortium]]
-[[Category: nysgrc]]
-[[Category: nysgxrc]]
-[[Category: protein structure initiative]]
-[[Category: psi]]
-[[Category: racemase]]
-[[Category: structural genomics]]
-[[Category: unknown function]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 08:56:24 2007''
+==See Also==
+*[[Mandelate racemase|Mandelate racemase]]
+*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
+[[Category: Roseovarius nubinhibens ISM]]
+[[Category: Almo SC]]
+[[Category: Bonanno J]]
+[[Category: Burley SK]]
+[[Category: Gerlt JA]]
+[[Category: Gheyi T]]
+[[Category: Gilmore M]]
+[[Category: Koss J]]
+[[Category: Lau C]]
+[[Category: Maletic M]]
+[[Category: Ozyurt S]]
+[[Category: Patskovsky Y]]
+[[Category: Sauder JM]]
+[[Category: Wasserman SR]]