2ifa: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

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-[[Image:2ifa.gif|left|200px]]<br /><applet load="2ifa" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="2ifa, resolution 2.30&Aring;" />
-'''Crystal Structure of the PUTATIVE NITROREDUCTASE (SMU.260) IN COMPLEX WITH FMN FROM STREPTOCOCCUS MUTANS, NORTHEAST STRUCTURAL GENOMICS TARGET SMR5.'''<br />
-==About this Structure==
+==Crystal Structure of the PUTATIVE NITROREDUCTASE (SMU.260) IN COMPLEX WITH FMN FROM STREPTOCOCCUS MUTANS, NORTHEAST STRUCTURAL GENOMICS TARGET SMR5.==
-IFA is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans] with FMN as [http://en.wikipedia.org/wiki/ligand ligand]. This structure superseeds the now removed PDB entry 1YW3. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2IFA OCA].
+<StructureSection load='2ifa' size='340' side='right'caption='[[2ifa]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-[[Category: Single protein]]
+== Structural highlights ==
-[[Category: Streptococcus mutans]]
+<table><tr><td colspan='2'>[[2ifa]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Strmu Strmu]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1yw3 1yw3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IFA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IFA FirstGlance]. <br>
-[[Category: Acton, T.B.]]
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
-[[Category: Byler, T.]]
+<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-[[Category: Chen, Y.]]
+<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1yw3|1yw3]]</div></td></tr>
-[[Category: Forouhar, F.]]
+<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SMU.260 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=210007 STRMU])</td></tr>
-[[Category: Hunt, J.F.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ifa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ifa OCA], [https://pdbe.org/2ifa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ifa RCSB], [https://www.ebi.ac.uk/pdbsum/2ifa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ifa ProSAT], [https://www.topsan.org/Proteins/NESGC/2ifa TOPSAN]</span></td></tr>
-[[Category: Ma, L.C.]]
+</table>
-[[Category: Montelione, G.T.]]
+== Evolutionary Conservation ==
-[[Category: NESG, Northeast.Structural.Genomics.Consortium.]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: Tong, L.]]
+Check<jmol>
-[[Category: Xiao, R.]]
+  <jmolCheckbox>
-[[Category: FMN]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/if/2ifa_consurf.spt"</scriptWhenChecked>
-[[Category: alpha-beta protein]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: nesg]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: northeast structural genomics consortium]]
+  </jmolCheckbox>
-[[Category: protein structure initiative]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ifa ConSurf].
-[[Category: psi-2]]
+<div style="clear:both"></div>
-[[Category: structural genomics]]
+__TOC__
+</StructureSection>
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 08:52:34 2007''
+[[Category: Large Structures]]
+[[Category: Strmu]]
+[[Category: Acton, T B]]
+[[Category: Byler, T]]
+[[Category: Chen, Y]]
+[[Category: Forouhar, F]]
+[[Category: Hunt, J F]]
+[[Category: Ma, L C]]
+[[Category: Montelione, G T]]
+[[Category: Structural genomic]]
+[[Category: Tong, L]]
+[[Category: Xiao, R]]
+[[Category: Alpha-beta protein]]
+[[Category: Nesg]]
+[[Category: PSI, Protein structure initiative]]
+[[Category: Unknown function]]