1yi7: Difference between revisions

Proteopedia Page Contributors and Editors (what is this?)Proteopedia Page Contributors and Editors (what is this?)

OCA

@@ Line 1: / Line 1: @@
-[[Image:1yi7.gif|left|200px]]<br /><applet load="1yi7" size="450" color="white" frame="true" align="right" spinBox="true"
-caption="1yi7, resolution 1.90&Aring;" />
-'''Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum'''<br />
-==About this Structure==
+==Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum==
-YI7 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Clostridium_acetobutylicum Clostridium acetobutylicum] with CA, SO4, EPE and GOL as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA].
+<StructureSection load='1yi7' size='340' side='right'caption='[[1yi7]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-[[Category: Clostridium acetobutylicum]]
+== Structural highlights ==
-[[Category: Single protein]]
+<table><tr><td colspan='2'>[[1yi7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YI7 FirstGlance]. <br>
-[[Category: Xylan 1,4-beta-xylosidase]]
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-[[Category: Almo, S.C.]]
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-[[Category: Burley, S.K.]]
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yi7 OCA], [https://pdbe.org/1yi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yi7 RCSB], [https://www.ebi.ac.uk/pdbsum/1yi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yi7 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1yi7 TOPSAN]</span></td></tr>
-[[Category: Fedorov, E.]]
+</table>
-[[Category: Gilliland, G.L.]]
+== Function ==
-[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+[https://www.uniprot.org/uniprot/Q97DM1_CLOAB Q97DM1_CLOAB]
-[[Category: Teplyakov, A.]]
+== Evolutionary Conservation ==
-[[Category: CA]]
+[[Image:Consurf_key_small.gif|200px|right]]
-[[Category: EPE]]
+Check<jmol>
-[[Category: GOL]]
+  <jmolCheckbox>
-[[Category: SO4]]
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yi/1yi7_consurf.spt"</scriptWhenChecked>
-[[Category: beta-propeller]]
+    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-[[Category: beta-sandwich]]
+    <text>to colour the structure by Evolutionary Conservation</text>
-[[Category: new york structural genomix research consortium]]
+  </jmolCheckbox>
-[[Category: nysgxrc]]
+</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yi7 ConSurf].
-[[Category: protein structure initiative]]
+<div style="clear:both"></div>
-[[Category: psi]]
-[[Category: structural genomics]]
-''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 25 04:09:19 2007''
+==See Also==
+*[[Xylosidase 3D structures|Xylosidase 3D structures]]
+__TOC__
+</StructureSection>
+[[Category: Clostridium acetobutylicum ATCC 824]]
+[[Category: Large Structures]]
+[[Category: Almo SC]]
+[[Category: Burley SK]]
+[[Category: Fedorov E]]
+[[Category: Gilliland GL]]
+[[Category: Teplyakov A]]